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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgagaagaaaaagaaaaagaatcgcagaaaggaaaattgagcttcatgagctaaagttatctatgaatttcctatagtttagttagcaaagtggtttaagtataattgaatttactcatggatctgtttgtttgtgtatttgctccattcacaagTGTAACAGCACGGCGACTGGTGGGGCATGTAAAAAGGCTAGGGTTCAACCCTCTCCGAGCCAACCACCACTAAAG

Basic information

species Vitis vinifera
transcript Vv09s0002g04120.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110709243|gb|EE084535.1|EE084535
EST:     TCTCTAACAAGGCTGGTGTTAGGAATCAACATGCAGATCATTCAACTGAG                         TGTAACAGCACGGCGACTGGTGGGGCATGTAAAAAGGCTAGGGTTCAACCC
genomic: TCTCTAACAAGGCTGGTGTTAGGAATCAACATGCAGATCATTCAACTGAGgtatgagaag ... cattcacaagTGTAACAGCACGGCGACTGGTGGGGCATGTAAAAAGGCTAGGGTTCAACCC
EST: gi|110398271|gb|EC964511.1|EC964511
EST:     TCTCTAACAAGGCTGGTGTTAGGAATCAACATGCAGATCATTCAACTGAG                         TGTAACAGCACGGAGACTGGTGGGGCATGTAAAAAGGCTAGGGTTCAACCC
genomic: TCTCTAACAAGGCTGGTGTTAGGAATCAACATGCAGATCATTCAACTGAGgtatgagaag ... cattcacaagTGTAACAGCACGGCGACTGGTGGGGCATGTAAAAAGGCTAGGGTTCAACCC
EST: gi|110379188|gb|EC944367.1|EC944367
EST:     AGATCATTCAACTGAG                         TGTAACAGCACGGAGACTGGTGGGGCATGTAAAAAGGCTAGGGTTCAACCC
genomic: AGATCATTCAACTGAGgtatgagaag ... cattcacaagTGTAACAGCACGGCGACTGGTGGGGCATGTAAAAAGGCTAGGGTTCAACCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tataattgaatttactcatggatctgtttgtttgtgtatttgctccattcacaagTGTAACAGCACGGCGACTGGTGGGGCATGTAAAAAGGCTAGGGTTCAACCCTCTCCGAGCCAACCACCACTAAAG
                                      tttgctcc  CT-rich tract
     ttgaattta  TA-rich tract