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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgacctttctgggttttgatttcatttgttttctctgttgatatgtattattttttgggtttggttttggttgatattgggttgttttcattttccagTTGAAGTTTCCCTATTTTCCTGCTCGGTTTCTGTGTGAAAGTAGAAAGAAAAAGGCAGAACTTCGCTACCTTTTCGTCTGGGTTGCTTCCAATACCATGG

Basic information

species Vitis vinifera
transcript Vv09s0002g03410.t01
intron # 2
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtattattttttgggtttggttttggttgatattgggttgttttcattttccagTTGAAGTTTCCCTATTTTCCTGCTCGGTTTCTGTGTGAAAGTAGAAAGAAAAAGGCAGAACTTCGCTACCTTTTCGTCTGGGTTGCTTCCAATACCATGG
                         ggttgat  putative branch site (score: 5)
                                      ttgttttcattttcc  putative PPT
                                         ttttcatttt  TA-rich tract