1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aaccaaacagggaagtgttgcttctgttttcttttatgcttctattgaagggcaaagttttctctgataaaatttattgatttattgatttattgttcagACACTTGAAATGCTTGAGAAAAAAGAGAGAGTTCTCATAAAGAAAGCCTCCGCTGAGGTTGAAAAGGCTAAGGAATATACTAAAGCAAAGAACAAAAGGG
species | Vitis vinifera |
transcript | Vv09s0002g02750.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAGAGCAAAGTCAAACAAATGCAGTCGCAACTCTGGACAAGCTAAACGAG ACACTTGAAATGCTTGAGAAAAAAGAGAGAGTTCTCATAAAGAAAGCCTCCEST: gi|18458659|gb|BM436937.1|BM436937
genomic: AAGAGCAAAGTCAAACAAATGCAGTCGCAACTCTGGACAAGCTAAACGAGgttcgatttc ... tattgttcagACACTTGAAATGCTTGAGAAAAAAGAGAGAGTTCTCATAAAGAAAGCCTCC
EST: AAGAGCAAAGTCAAACAAATGCAGTCGCAACTCTGGACAAGCTAAACGAG ACACTTGAAATGCTTGAGAAAAAAGAGAGAGTTCTCATAAAGAAAGCCTCCEST: gi|110710254|gb|EE086428.1|EE086428
genomic: AAGAGCAAAGTCAAACAAATGCAGTCGCAACTCTGGACAAGCTAAACGAGgttcgatttc ... tattgttcagACACTTGAAATGCTTGAGAAAAAAGAGAGAGTTCTCATAAAGAAAGCCTCC
EST: AAGAGCAAAGTCAAACAAATGCAGTCGCAACTCTGGACAAGCTAAACGAG ACACTTGAAATGCTTGAGAAAAAAGAGAGAGTTCTCATAAAGAAAGCCTCCEST: gi|30252607|gb|CB970158.1|CB970158
genomic: AAGAGCAAAGTCAAACAAATGCAGTCGCAACTCTGGACAAGCTAAACGAGgttcgatttc ... tattgttcagACACTTGAAATGCTTGAGAAAAAAGAGAGAGTTCTCATAAAGAAAGCCTCC
EST: AAGAGCAAAGTCAAACAAATGCAGTCGCAACTCTGGACAAGCTAAACGAG ACACTTGAAATGCTTGAGAAAAAAGAGAGAGTTCTCATAAAGAAAGCCTCCEST: gi|110687799|gb|EE065623.1|EE065623
genomic: AAGAGCAAAGTCAAACAAATGCAGTCGCAACTCTGGACAAGCTAAACGAGgttcgatttc ... tattgttcagACACTTGAAATGCTTGAGAAAAAAGAGAGAGTTCTCATAAAGAAAGCCTCC
EST: AAGAGCAAAGTCAAACAAATGCAGTCGCAACTCTGGACAAGCTAAACGAG ACACTTGAAATGCTTGAGAAAAAAGAGAGAGTTCTCATAAAGAAAGCCTCCEST: gi|110702629|gb|EE078765.1|EE078765
genomic: AAGAGCAAAGTCAAACAAATGCAGTCGCAACTCTGGACAAGCTAAACGAGgttcgatttc ... tattgttcagACACTTGAAATGCTTGAGAAAAAAGAGAGAGTTCTCATAAAGAAAGCCTCC
EST: AAGAGCAAAGTCAAACAAATGCAGTCGCAACTCTGGACAAGCTAAACGAG ACACTTGAAATGCTTGAGAAAAAAGAGAGAGTTCTCATAAAGAAAGCCTCCEST: gi|30297117|gb|CB973911.1|CB973911
genomic: AAGAGCAAAGTCAAACAAATGCAGTCGCAACTCTGGACAAGCTAAACGAGgttcgatttc ... tattgttcagACACTTGAAATGCTTGAGAAAAAAGAGAGAGTTCTCATAAAGAAAGCCTCC
EST: AGAGC-AAGTCAAACAAATGCAGTCGCAACTCTGGACAAGCTAAACGAG ACACTTGAAATGCTTGAGAAAAAAGAGAGAGTTCTCATAAAGAAAGCCTCC
genomic: AGAGCAAAGTCAAACAAATGCAGTCGCAACTCTGGACAAGCTAAACGAGgttcgatttc ... tattgttcagACACTTGAAATGCTTGAGAAAAAAGAGAGAGTTCTCATAAAGAAAGCCTCC
tgaagggcaaagttttctctgataaaatttattgatttattgatttattgttcagACACTTGAAATGCTTGAGAAAAAAGAGAGAGTTCTCATAAAGAAAGCCTCCGCTGAGGTTGAAAAGGCTAAGGAATATACTAAAGCAAAGAACAAAAGGG
tattgat putative branch site (score: 3)
ttttctctgataaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaccaaacagggaagtgttgcttctgttttcttttatgcttctattgaagggcaaagttttctctgataaaatttattgatttattgatttattgttcagACACTTGAAATGCTTGAGAAAAAAGAGAGAGTTCTCATAAAGAAAGCCTCCGCTGAGGTTGAAAAGGCTAAGGAATATACTAAAGCAAAGAACAAAAGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- ccaaaca
- - - - - - - -tgttgct
- - - - - - - - - tgcttct
- - - - - - - - - - - - - - - - - - - - - - - - agggcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gataaaa