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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacttcttcacaccttcaaactctgaattcaaataagaattgaaatttttttcagaaagaacatgcattttttatgtctcatttgatctgtgtgttgtgtcagTGTGGGGGGTTTTGGTCTCATGGCGTTTGCTTCACCCCATCAGACGTACATTCCTCTGCCGTCTGACTCGG

Basic information

species Vitis vinifera
transcript Vv09s0002g02690.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110684926|gb|EE062761.1|EE062761
EST:     AGGAAAAAGCGCGAGAAAGTAGAGGCATGGCCTGAGAAAGAACCAGACCG                         TGTGGGGGGTTTTGGTCTCATGGCGTTTGCTTCACCCCATCAGACGTACAT
genomic: AGGAAAAAGCGCGAGAAAGTAGAGGCATGGCCTGAGAAAGAACCAGACCGgtaacttctt ... gttgtgtcagTGTGGGGGGTTTTGGTCTCATGGCGTTTGCTTCACCCCATCAGACGTACAT
EST: gi|71861468|gb|DT010523.1|DT010523
EST:     AGAGGCATGGCCTGAGAAAGAACCAGACCG                         TGTGGGGGGTTTTGGTCTCATGGCGTTTGCTTCACCCCATCAGACGTACAT
genomic: AGAGGCATGGCCTGAGAAAGAACCAGACCGgtaacttctt ... gttgtgtcagTGTGGGGGGTTTTGGTCTCATGGCGTTTGCTTCACCCCATCAGACGTACAT
EST: gi|110688773|gb|EE067709.1|EE067709
EST:     GAACCAGACCG                         TGTGGGGGGTTTTGGTCTCATGGCGTTTGCTTCACCCCATCAGACGTACAT
genomic: GAACCAGACCGgtaacttctt ... gttgtgtcagTGTGGGGGGTTTTGGTCTCATGGCGTTTGCTTCACCCCATCAGACGTACAT
EST: gi|34543088|gb|CF511320.1|CF511320
EST:     GCCTGAGAAAG-ATCAGACCG                         TGGAT-GGGGGTTTTGGTCTCATGGCGTTTGCTTCACCCCATCAGACGTAC
genomic: GCCTGAGAAAGAACCAGACCGgtaacttctt ... gttgtgtcagT-G-TGGGGGGTTTTGGTCTCATGGCGTTTGCTTCACCCCATCAGACGTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttcagaaagaacatgcattttttatgtctcatttgatctgtgtgttgtgtcagTGTGGGGGGTTTTGGTCTCATGGCGTTTGCTTCACCCCATCAGACGTACATTCCTCTGCCGTCTGACTCGG
                                atttgat  putative branch site (score: 5)
                  attttttatgt  TA-rich tract