1 5' 3' | 2 5' 3' | 3 5' 3' |
...gggtttacagtgtttaccactaggcatttggaaacttttagctttttgggttcatggaacgtgcattaggcttatttatttctttgtggggatgtactagGGTTGGCAAACCACAAAACAGTTACTATTCAAGGAGGCAAAGATAATGCAGTGGTGCTTGCAACAACAAAGACCAAGAAACAGAACAAGCCTGGTAGTTT
species | Vitis vinifera |
transcript | Vv09s0002g02560.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAGCAAAGAGAGCAACAATCTCTACAACGTCAACTCCTACAAGCACTCTG GGTTGGCAAACCACAAAACAGTTACTATTCAAGGAGGCAAAGATAATGCAGEST: gi|37188885|gb|CF608234.1|CF608234
genomic: CAGCAAAGAGAGCAACAATCTCTACAACGTCAACTCCTACAAGCACTCTGgtattagtcg ... gatgtactagGGTTGGCAAACCACAAAACAGTTACTATTCAAGGAGGCAAAGATAATGCAG
EST: CAGCAAAGAGAGCAACAATCTCTACAACGTCAACTCCTACAAGCACTCTG GGTTGGCAAACCACAAAACAGTTACTATTCAAGGAGGCAAAGATAATGCAGEST: gi|30126857|gb|CB912196.1|CB912196
genomic: CAGCAAAGAGAGCAACAATCTCTACAACGTCAACTCCTACAAGCACTCTGgtattagtcg ... gatgtactagGGTTGGCAAACCACAAAACAGTTACTATTCAAGGAGGCAAAGATAATGCAG
EST: CAGCAAAGAGAGCAACAATCTCTACAACGTCAACTCCTACAAGCACTCTG GGTTGGCAAACCACAAAACAGTTACTATTCAAGGAGGCAAAGATAATGCAGEST: gi|37187461|gb|CF606814.1|CF606814
genomic: CAGCAAAGAGAGCAACAATCTCTACAACGTCAACTCCTACAAGCACTCTGgtattagtcg ... gatgtactagGGTTGGCAAACCACAAAACAGTTACTATTCAAGGAGGCAAAGATAATGCAG
EST: CAGCAAAGAGAGCAACAATCTCTACAACGTCAACTCCTACAAGCACTCTG GGTTGGCAAACCACAAAACAGTTACTATTCAAGGAGGCAAAGATAATGCAGEST: gi|30137111|gb|CB922449.1|CB922449
genomic: CAGCAAAGAGAGCAACAATCTCTACAACGTCAACTCCTACAAGCACTCTGgtattagtcg ... gatgtactagGGTTGGCAAACCACAAAACAGTTACTATTCAAGGAGGCAAAGATAATGCAG
EST: CAGCAAAGAGAGCAACAATCTCTACAACGTCAACTCCTACAAGCACTCTG GGTTGGCAAACCACAAAACAGTTACTATTCAAGGAGGCAAAGATAATGCAGEST: gi|71866381|gb|DT015436.1|DT015436
genomic: CAGCAAAGAGAGCAACAATCTCTACAACGTCAACTCCTACAAGCACTCTGgtattagtcg ... gatgtactagGGTTGGCAAACCACAAAACAGTTACTATTCAAGGAGGCAAAGATAATGCAG
EST: CAGCAAAGAGAGCAACAATCTCTACAACGTCAACTCCTACAAGCACTCTG GGTTGGCAAACCACAAAACAGTTACTATTCAAGGAGGCAAAGATAATGCAGEST: gi|30127339|gb|CB912678.1|CB912678
genomic: CAGCAAAGAGAGCAACAATCTCTACAACGTCAACTCCTACAAGCACTCTGgtattagtcg ... gatgtactagGGTTGGCAAACCACAAAACAGTTACTATTCAAGGAGGCAAAGATAATGCAG
EST: CAGCAAAGAGAGCAACAATCTCTACAACGTCAACTCCTACAAGCACTCTG GGTTGGCAAACCACAAAACAGTTACTATTCAAGGAGGCAAAGATAATGCAGEST: gi|77581630|gb|DV219763.1|DV219763
genomic: CAGCAAAGAGAGCAACAATCTCTACAACGTCAACTCCTACAAGCACTCTGgtattagtcg ... gatgtactagGGTTGGCAAACCACAAAACAGTTACTATTCAAGGAGGCAAAGATAATGCAG
EST: CAGCAAAGAGAGCAACAATCTCTACAACGTCAACTCCTACAAGCACTCTG GGTTGGCAAACCACAAAACAGTTACTATTCAAGGAGGCAAAGATAATGCAGEST: gi|110365315|gb|EC928109.1|EC928109
genomic: CAGCAAAGAGAGCAACAATCTCTACAACGTCAACTCCTACAAGCACTCTGgtattagtcg ... gatgtactagGGTTGGCAAACCACAAAACAGTTACTATTCAAGGAGGCAAAGATAATGCAG
EST: CAGCAAAGAGAGCAACAATCTCTACAACGTCAACTCCTACAAGCACTCTG GGTTGGCAAACCACAAAACAGTTACTATTCAAGGAGGCAAAGATAATGCAGEST: gi|30136063|gb|CB921401.1|CB921401
genomic: CAGCAAAGAGAGCAACAATCTCTACAACGTCAACTCCTACAAGCACTCTGgtattagtcg ... gatgtactagGGTTGGCAAACCACAAAACAGTTACTATTCAAGGAGGCAAAGATAATGCAG
EST: CAGCAAAGAGAGCAACAATCTCTACAACGTCAACTCCTACAAGCACTCTG GGTTGGCAAACCACAAAACAGTTACTATTCAAGGAGGCAAAGATAATGCAGEST: gi|71869153|gb|DT018208.1|DT018208
genomic: CAGCAAAGAGAGCAACAATCTCTACAACGTCAACTCCTACAAGCACTCTGgtattagtcg ... gatgtactagGGTTGGCAAACCACAAAACAGTTACTATTCAAGGAGGCAAAGATAATGCAG
EST: CAGCAAAGAGAGCAACAATCTCTACAACGTCAACTCCTACAAGCACTCTG GGTTGGCAAACCACAAAACAGTTACTATTCAAGGAGGCAAAGATAATGCAGEST: gi|37187417|gb|CF606770.1|CF606770
genomic: CAGCAAAGAGAGCAACAATCTCTACAACGTCAACTCCTACAAGCACTCTGgtattagtcg ... gatgtactagGGTTGGCAAACCACAAAACAGTTACTATTCAAGGAGGCAAAGATAATGCAG
EST: CAGCAAAGAGAGCAACAATCTCTACAACGTCAACTCCTACAAGCACTCTG GGTTGGCAAACCACAAAACAGTTACTATTCAAGGAGGCAAAGATAATGCAGEST: gi|37187689|gb|CF607042.1|CF607042
genomic: CAGCAAAGAGAGCAACAATCTCTACAACGTCAACTCCTACAAGCACTCTGgtattagtcg ... gatgtactagGGTTGGCAAACCACAAAACAGTTACTATTCAAGGAGGCAAAGATAATGCAG
EST: CAGCAAAGAGAGCAACAATCTCTACAACGTCAACTCCTACAAGCACTCTG GGTTGGCAAACCACAAAACAGTTACTATTCAAGGAGGCAAAGATAATGCAGEST: gi|71855040|gb|DT004095.1|DT004095
genomic: CAGCAAAGAGAGCAACAATCTCTACAACGTCAACTCCTACAAGCACTCTGgtattagtcg ... gatgtactagGGTTGGCAAACCACAAAACAGTTACTATTCAAGGAGGCAAAGATAATGCAG
EST: CAGCAAAGAGAGCAACAATCTCTACAACGTCAACTCCTACAAGCACTCTG GGTTGGCAAACCACAAAACAGTTACTATTCAAGGAGGCAAAGATAATGCAGEST: gi|71871612|gb|DT020667.1|DT020667
genomic: CAGCAAAGAGAGCAACAATCTCTACAACGTCAACTCCTACAAGCACTCTGgtattagtcg ... gatgtactagGGTTGGCAAACCACAAAACAGTTACTATTCAAGGAGGCAAAGATAATGCAG
EST: CAGCAAAGAGAGCAACAATCTCTACAACGTCAACTCCTACAAGCACTCTG GGTTGGCAAACCACAAAACAGTTACTATTCAAGGAGGCAAAGATAATGCAGEST: gi|71860821|gb|DT009876.1|DT009876
genomic: CAGCAAAGAGAGCAACAATCTCTACAACGTCAACTCCTACAAGCACTCTGgtattagtcg ... gatgtactagGGTTGGCAAACCACAAAACAGTTACTATTCAAGGAGGCAAAGATAATGCAG
EST: CAGCAAAGAGAGCAACAATCTCTACAACGTCAACTCCTACAAGCACTCTG GGTTGGCAAACCACAAAACAGTTACTATTCAAGGAGGCAAAGATAATGCAGEST: gi|71868068|gb|DT017123.1|DT017123
genomic: CAGCAAAGAGAGCAACAATCTCTACAACGTCAACTCCTACAAGCACTCTGgtattagtcg ... gatgtactagGGTTGGCAAACCACAAAACAGTTACTATTCAAGGAGGCAAAGATAATGCAG
EST: CAGCAAAGAGAGCAACAATCTCTACAACGTCAACTCCTACAAGCACTCTG GGTTGGCAAACCACAAAACAGTTACTATTCAAGGAGGCAAAGATAATGCAGEST: gi|110393499|gb|EC958782.1|EC958782
genomic: CAGCAAAGAGAGCAACAATCTCTACAACGTCAACTCCTACAAGCACTCTGgtattagtcg ... gatgtactagGGTTGGCAAACCACAAAACAGTTACTATTCAAGGAGGCAAAGATAATGCAG
EST: CAGCAAAGAGAGCAACAATCTCTACAACGTCAACTCCTACAAGCACTCTG GGTTGGCAAACCACAAAACAGTTACTATTCAAGGAGGCAAAGATAATGCAGEST: gi|110707611|gb|EE084204.1|EE084204
genomic: CAGCAAAGAGAGCAACAATCTCTACAACGTCAACTCCTACAAGCACTCTGgtattagtcg ... gatgtactagGGTTGGCAAACCACAAAACAGTTACTATTCAAGGAGGCAAAGATAATGCAG
EST: CAGCAAAGAGAGCAACAATCTCTACAACGTCAACTCCTACAAGCACTCTG GGTTGGCAAACCACAAAACAGTTACTATTCAAGGAGGCAAAGATAATGCAGEST: gi|71866729|gb|DT015784.1|DT015784
genomic: CAGCAAAGAGAGCAACAATCTCTACAACGTCAACTCCTACAAGCACTCTGgtattagtcg ... gatgtactagGGTTGGCAAACCACAAAACAGTTACTATTCAAGGAGGCAAAGATAATGCAG
EST: CAGCAAAGAGAGCAACAATCTCTACAACGTCAACTCCTACAAGCACTCTG GGTTGGCAAACCACAAAACAGTTACTATTCAAGGAGGCAAAGATAATGCAGEST: gi|30133884|gb|CB919223.1|CB919223
genomic: CAGCAAAGAGAGCAACAATCTCTACAACGTCAACTCCTACAAGCACTCTGgtattagtcg ... gatgtactagGGTTGGCAAACCACAAAACAGTTACTATTCAAGGAGGCAAAGATAATGCAG
EST: CAGCAAAGAGAGCAACAATCTCTACAACGTCAACTCCTACAAGCACTCTG GGTTGGCAAACCACAAAACAGTTACTATTCAAGGAGGCAAAGATAATGCAGEST: gi|37188785|gb|CF608134.1|CF608134
genomic: CAGCAAAGAGAGCAACAATCTCTACAACGTCAACTCCTACAAGCACTCTGgtattagtcg ... gatgtactagGGTTGGCAAACCACAAAACAGTTACTATTCAAGGAGGCAAAGATAATGCAG
EST: CAGCAAAGAGAGCAACAATCTCTACAACGTCAACTCCTACAAGCACTCTG GGTTGGCAAACCACAAAACAGTTACTATTCAAGGAGGCAAAGATAATGCAGEST: gi|29782791|gb|CB348407.2|CB348407
genomic: CAGCAAAGAGAGCAACAATCTCTACAACGTCAACTCCTACAAGCACTCTGgtattagtcg ... gatgtactagGGTTGGCAAACCACAAAACAGTTACTATTCAAGGAGGCAAAGATAATGCAG
EST: CAGCAAAGAGAGCAACAATCTCTACAACGTCAACTCCTACAAGCACTCTG GGTTGGCAAACCACAAAACAGTTACTATTCAAGGAGGCAAAGATAATGCAG
genomic: CAGCAAAGAGAGCAACAATCTCTACAACGTCAACTCCTACAAGCACTCTGgtattagtcg ... gatgtactagGGTTGGCAAACCACAAAACAGTTACTATTCAAGGAGGCAAAGATAATGCAG
ttgggttcatggaacgtgcattaggcttatttatttctttgtggggatgtactagGGTTGGCAAACCACAAAACAGTTACTATTCAAGGAGGCAAAGATAATGCAGTGGTGCTTGCAACAACAAAGACCAAGAAACAGAACAAGCCTGGTAGTTT
ttatttatttctttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gggtttacagtgtttaccactaggcatttggaaacttttagctttttgggttcatggaacgtgcattaggcttatttatttctttgtggggatgtactagGGTTGGCAAACCACAAAACAGTTACTATTCAAGGAGGCAAAGATAATGCAGTGGTGCTTGCAACAACAAAGACCAAGAAACAGAACAAGCCTGGTAGTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - ccactag
- - - - - - - - - - - -gcatttg
- - - - - - - - - - - - - - - - - - - - - -ttttggg
- - - - - - - - - - - - - - - - - - - - - - - - - ttcatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgcatt