1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtaattggatagttctgtatgatatggaaaagtagaattgattcataacttacttgattgaatatagtttgtgaatgataaacctcactgctcaagagttctgtggtttgcatttgttaagagcggctgttagatttcttagctgtgttcttttgataatacagGATGATGCAGATTGGTCAACCTTAGGAGTAAAAGAG
species | Vitis vinifera |
transcript | Vv09s0002g02500.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAGTACCGCCGGAAAGGCAGAAGATCATGGTCAAAGGTGGTTTACTTAAG GATGATGCAGATTGGTCAACCTTAGGAGTAAAAGAGEST: gi|30306288|gb|CB983082.1|CB983082
genomic: GAGTACCGCCGGAAAGGCAGAAGATCATGGTCAAAGGTGGTTTACTTAAGgtaattggat ... gataatacagGATGATGCAGATTGGTCAACCTTAGGAGTAAAAGAG
EST: GAGTACCGCCAGAAAGGCAGAAGATCATGGGCAAAGGTGGTTTACTTAAG GATGATGCAGATTGGTCAACATTAGAAGTAAAAGAGEST: gi|110722963|gb|EE099729.1|EE099729
genomic: GAGTACCGCCGGAAAGGCAGAAGATCATGGTCAAAGGTGGTTTACTTAAGgtaattggat ... gataatacagGATGATGCAGATTGGTCAACCTTAGGAGTAAAAGAG
EST: GAGTACCGCCGGAAAGGCAGAAGATCATGGTCAAAGGTGGTTTACTTAAG GATGATGCAGATTGGTCAACCTTAGGAGTAAAAGAGEST: gi|110699590|gb|EE076722.1|EE076722
genomic: GAGTACCGCCGGAAAGGCAGAAGATCATGGTCAAAGGTGGTTTACTTAAGgtaattggat ... gataatacagGATGATGCAGATTGGTCAACCTTAGGAGTAAAAGAG
EST: GAGTACCGCCGGAAAGGCAGAAGATCATGGTCAAAGGTGGTTTACTTAAG GATGATGCAGATTGGTCAACCTTAGGAGTAAAAGAGEST: gi|110723331|gb|EE100521.1|EE100521
genomic: GAGTACCGCCGGAAAGGCAGAAGATCATGGTCAAAGGTGGTTTACTTAAGgtaattggat ... gataatacagGATGATGCAGATTGGTCAACCTTAGGAGTAAAAGAG
EST: GAGTACCGCCGGAAAGGCAGAAGATCATGGTCAAAGGTGGTTTACTTAAG GATGATGCAGATTGGTCAACCTTAGGAGTAAAAGAG
genomic: GAGTACCGCCGGAAAGGCAGAAGATCATGGTCAAAGGTGGTTTACTTAAGgtaattggat ... gataatacagGATGATGCAGATTGGTCAACCTTAGGAGTAAAAGAG
gcatttgttaagagcggctgttagatttcttagctgtgttcttttgataatacagGATGATGCAGATTGGTCAACCTTAGGAGTAAAAGAG
ttttgat putative branch site (score: 4)
ttcttttg CT-rich tract
ttcttttgataata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattggatagttctgtatgatatggaaaagtagaattgattcataacttacttgattgaatatagtttgtgaatgataaacctcactgctcaagagttctgtggtttgcatttgttaagagcggctgttagatttcttagctgtgttcttttgataatacagGATGATGCAGATTGGTCAACCTTAGGAGTAAAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT