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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttgcaaaatcatttagtgttatagatcatttacaaatttgttttactacatgtttttcttctgatggttgcaaacagGTCGATGTGTTCGGTTCCATTGCCTATGTTTCTCAGACTTCTTGGATCCAAAGTGGGACGATTCGCGACAACATTCTCTGTGGAAAACCAATGGATACAA

Basic information

species Vitis vinifera
transcript Vv09s0002g02430.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g02430.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G20780.1 (Glycine max), 3'ss of exon 3
-------------------------------------gtgagttgcaaaatcatttagtgttatagatcatttacaaatttgtt--ttactacatgttttt---cttctgatggttgcaaacagGTCGATGTGTTCGGTTCCATTGCCTATGTTTCTCAGACTTCTTGGATCCAAAGTGGGACGATTCGCGACAACATTCTCTGTGGAAAACCAATGGATACAA
                                      | |      ||   | |||||  | |  || | |   ||| |  ||  ||| |     |||||   ||| |||   | | ||||||||   ||| |  ||  |  ||||||| ||||| || ||| |||||||||||||||| || ||||| || || ||||||| ||||||||||||||||  ||
gtgagttattgatcatccaaatttagtatattataacattaaacatgaagcaacttagtaattttaatgactattaaactctttatttatttttcttttttgctcttgtgaaaatggaaaacagGTTAGTGTATGTGGAACACTTGCCTACGTTTCCCAAACTCCTTGGATCCAAAGTGGTACAATTCGTGATAATATTCTCTATGGAAAACCAATGGATGAAA

upper sequence: Vv09s0002g02430.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA07G01390.1 (Glycine max), 3'ss of exon 1
-------------------------gtgagttgcaaaatc--atttagtgttatagatcattta-caaatttgttttactacatgtttttcttctgatggttgcaaacagGTCGATGTGTTCGGTTCCATTGCCTATGTTTCTCAGACTTCTTGGATCCAAAGTGGGACGATTCGCGACAACATTCTCTGTGGAAAACCAATGGATACAA
                         ||   |||  |  ||  ||| |   |||||   | | |  | ||    ||||  | | ||   || | |  ||   || ||||||||  ||||||  ||  |  | |||||||||||||| ||||||||||| |||||||||||  |||| || || || |||| |||||| |||||||| | ||
gtgagttattaaccaaacaagtttagttttttgtcatgtcaaattcatgtttataatccttgtgtctaacacttttttgtccctgaaattttac-aataactgaaaacagGTTAATGTGTCTGGCACTGTAGCCTATGTTTCTCAAACTTCTTGGATACAAAGTGGGACAGTTCGAGATAATATACTCTTTGGAAAGCCAATGGACAAAA

upper sequence: Vv09s0002g02430.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G20360.1 (Glycine max), 3'ss of exon 1
gtgagttgcaaaatc-----atttagtgttat---agatcatttacaaatttgttttactacatgtttttcttc-tgatggttgcaaacagGTCGATGTGTTCGGTTCCATTGCCTATGTTTCTCAGACTTCTTGGATCCAAAGTGGGACGATTCGCGACAACATTCTCTGTGGAAAACCAATGGATACAA
|||||||   ||         |||||| || |   |   ||  | || |||| | ||  |     |  |  ||| ||||  | | ||||||||  ||||    ||  | || |||||||||||||| ||||||||||| |||||||||||  |||| || || || ||||  ||||| |||||||| | ||
gtgagttattaaccatacaagtttagttttttgtcatgccaaattcatatttatatttttgtccttgatatttcatgataatggtaaacagGTGAATGTAGGTGGCACAATAGCCTATGTTTCTCAAACTTCTTGGATACAAAGTGGGACAGTTCGGGATAATATACTCTTCGGAAAGCCAATGGACAAAA

upper sequence: Vv09s0002g02430.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G20770.2 (Glycine max), 3'ss of exon 1
-------------------------gtgagttgcaaaatcatttagtgttatagatcat--ttacaaatttgttttactacatgtttttcttctgatggttgcaaacagGTCGATGTGTTCGGTTCCATTGCCTATGTTTCTCAGACTTCTTGGATCCAAAGTGGGACGATTCGCGACAACATTCTCTGTGGAAAACCAATGGATACAA
                         ||   |  ||     | ||  ||||    ||| |  | || ||    |||| || | ||  | |   |  ||  | | ||||||||  ||||||  ||  |||| |||||||||||||| ||||||||||| ||| |||||||  |||  || || || ||||  || || |||||||| | ||
gtgagttactaaccaaaagactctagtttttgtcatgtcaaattcatgtttctaatcttgctaactaacactttttcctccctgaatcttcac-aataatggaaaacagGTTAATGTGTGTGGCACCATAGCCTATGTTTCTCAAACTTCTTGGATACAAGGTGGGACAGTTCAAGATAATATACTCTTCGGCAAGCCAATGGACAAAA

upper sequence: Vv09s0002g02430.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT3G21250.2 (Arabidopsis thaliana), 3'ss of exon 2
--------gtgagttgcaaaatca---tttagtgttatagatcatttacaaatttgttt-tactacatgtttttcttctgatggttgc---aaacagGTCGATGTGTTCGGTTCCATTGCCTATGTTTCTCAGACTTCTTGGATCCAAAGTGGGACGATTCGCGACAACATTCTCTGTGGAAAACCAATGGATACAA
         | ||   | ||  |    |||    || |  || |  || | |||||||| | | | ||||||   ||  | ||        ||||||||  | || || || ||||| || |||||||||||||||||||||||||||||||| || || || ||||| || |||| |||||| || ||||| |  |
gtaagcaaatcagccaccaagactgactttcacttttttcattagatatacatttgtttgttccaaatgtttcctttacgttgtccaattgaaacagGTAAAGGTCTTTGGGTCCATCGCTTATGTTTCTCAGACTTCTTGGATCCAAAGTGGTACCATCCGGGACAATATCCTCTATGGAAAGCCCATGGAAAGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agatcatttacaaatttgttttactacatgtttttcttctgatggttgcaaacagGTCGATGTGTTCGGTTCCATTGCCTATGTTTCTCAGACTTCTTGGATCCAAAGTGGGACGATTCGCGACAACATTCTCTGTGGAAAACCAATGGATACAA
                                    ttctgat  putative branch site (score: 3)
     atttacaaatttgttt  TA-rich tract