1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttctgtactattcaatctcttttagagatgaaagagtaaagatatggcttgctcaaattgcctagattagacttgtttatcatattgttgatatctgcagCGGAGATAGCAATGTTTGAGAACAACGTAGTTATCTACAAGTTTATCCAGGATCTGCACTTCTTTGTGACTGGAGGTGATGATGAAAACGAACTCATCTT
species | Vitis vinifera |
transcript | Vv09s0002g01710.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGAAAAGTCCGTCTTCACTAAAACTCAAAAGACAAATGCTCGGACTGAGG CGGAGATAGCAATGTTTGAGAACAACGTAGTTATCTACAAGTTTATCCAGGEST: gi|110689128|gb|EE065079.1|EE065079
genomic: TGAAAAGTCCGTCTTCACTAAAACTCAAAAGACAAATGCTCGGACTGAGGgtataattat ... atatctgcagCGGAGATAGCAATGTTTGAGAACAACGTAGTTATCTACAAGTTTATCCAGG
EST: TGAAAAGTCCGTCTTCACTAAAACTCAAAAGACAAATGCTCGGACTGAGG CGGAGATAGCAATGTTTGAGAACAACGTAGTTATCTACAAGTTTATCCAGGEST: gi|71882963|gb|DT032018.1|DT032018
genomic: TGAAAAGTCCGTCTTCACTAAAACTCAAAAGACAAATGCTCGGACTGAGGgtataattat ... atatctgcagCGGAGATAGCAATGTTTGAGAACAACGTAGTTATCTACAAGTTTATCCAGG
EST: TGAAAAGTCCGTCTTCACTAAAACTCAAAAGACAAATGCTCGGACTGAGG CAGAGATAGCAATGTTTGAGAACAACATAGTTATCTACAAGTTTATCCAGGEST: gi|110715702|gb|EE094055.1|EE094055
genomic: TGAAAAGTCCGTCTTCACTAAAACTCAAAAGACAAATGCTCGGACTGAGGgtataattat ... atatctgcagCGGAGATAGCAATGTTTGAGAACAACGTAGTTATCTACAAGTTTATCCAGG
EST: TGAAAAGTCCGTCTTCACTAAAACTCAAAAGACAAATGCTCGGACTGAGG CGGAGATAGCAATGTTTGAGAACAACGTAGTTATCTACAAGTTTATCCAGGEST: gi|30298228|gb|CB975022.1|CB975022
genomic: TGAAAAGTCCGTCTTCACTAAAACTCAAAAGACAAATGCTCGGACTGAGGgtataattat ... atatctgcagCGGAGATAGCAATGTTTGAGAACAACGTAGTTATCTACAAGTTTATCCAGG
EST: TGAAAAGTCCGTCTTCACTAAAACTCAAAAGACAAATGCTCGGACTGAGG CGGAGATAGCAATGTTTGAGAACAACATAGTTATCTACAAGTTTATCCAGGEST: gi|110376897|gb|EC941971.1|EC941971
genomic: TGAAAAGTCCGTCTTCACTAAAACTCAAAAGACAAATGCTCGGACTGAGGgtataattat ... atatctgcagCGGAGATAGCAATGTTTGAGAACAACGTAGTTATCTACAAGTTTATCCAGG
EST: TGAAAAGTCCGTCTTCACTAAAACTCAAAAGACAAATGCTCGGACTGAGG CAGAGATAGCAATGTTTGAGAACAACATAGTTATCTACAAGTTTATCCAGGEST: gi|110694240|gb|EE071171.1|EE071171
genomic: TGAAAAGTCCGTCTTCACTAAAACTCAAAAGACAAATGCTCGGACTGAGGgtataattat ... atatctgcagCGGAGATAGCAATGTTTGAGAACAACGTAGTTATCTACAAGTTTATCCAGG
EST: TGAAAAGTCCGTCTTCACTAAAACTCAAAAGACAAATGCTCGGACTGAGG CGGAGATAGCAATGTTTGAGAACAACGTAGTTATCTACAAGTTTATCCAGGEST: gi|77583199|gb|DV220638.1|DV220638
genomic: TGAAAAGTCCGTCTTCACTAAAACTCAAAAGACAAATGCTCGGACTGAGGgtataattat ... atatctgcagCGGAGATAGCAATGTTTGAGAACAACGTAGTTATCTACAAGTTTATCCAGG
EST: TGAAAAGTCCGTCTTCACTAAAACTCAAAAGACAAATGCTCGGACTGAGG CGGAGATAGCAATGTTTGAGAACAACATAGTTATCTACAAGTTTATCCAGGEST: gi|110723706|gb|EE101328.1|EE101328
genomic: TGAAAAGTCCGTCTTCACTAAAACTCAAAAGACAAATGCTCGGACTGAGGgtataattat ... atatctgcagCGGAGATAGCAATGTTTGAGAACAACGTAGTTATCTACAAGTTTATCCAGG
EST: TGAAAAGTCCGTCTTCACTAAAACTCAAAAGACAAATGCTCGGACTGAGG CGGAGATAGCAATGTTTGAGAACAACGTAGTTATCTACAAGTTTATCCAGGEST: gi|71875897|gb|DT024952.1|DT024952
genomic: TGAAAAGTCCGTCTTCACTAAAACTCAAAAGACAAATGCTCGGACTGAGGgtataattat ... atatctgcagCGGAGATAGCAATGTTTGAGAACAACGTAGTTATCTACAAGTTTATCCAGG
EST: TGAAAAGTCCGTCTTCACTAAAACTCAAAAGACAAATGCTCGGACTGA-- -GGAGATAGCAATGTTTGAGAACAACATAGTTATCTACAAGTTTATCCAGGEST: gi|71873249|gb|DT022304.1|DT022304
genomic: TGAAAAGTCCGTCTTCACTAAAACTCAAAAGACAAATGCTCGGACTGAGGgtataattat ... atatctgcagCGGAGATAGCAATGTTTGAGAACAACGTAGTTATCTACAAGTTTATCCAGG
EST: TGAAAAGTCCGTCTTCACTAAAACTCAAAAGACAAATGCTCGGACTGAGG CGGAGATAGCAATGTTTGAGAACAACATAGTTATCTACAAGTTTATCCAGG
genomic: TGAAAAGTCCGTCTTCACTAAAACTCAAAAGACAAATGCTCGGACTGAGGgtataattat ... atatctgcagCGGAGATAGCAATGTTTGAGAACAACGTAGTTATCTACAAGTTTATCCAGG
ggcttgctcaaattgcctagattagacttgtttatcatattgttgatatctgcagCGGAGATAGCAATGTTTGAGAACAACGTAGTTATCTACAAGTTTATCCAGGATCTGCACTTCTTTGTGACTGGAGGTGATGATGAAAACGAACTCATCTT
tgttgat putative branch site (score: 4)
ttgtttatcatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctgtactattcaatctcttttagagatgaaagagtaaagatatggcttgctcaaattgcctagattagacttgtttatcatattgttgatatctgcagCGGAGATAGCAATGTTTGAGAACAACGTAGTTATCTACAAGTTTATCCAGGATCTGCACTTCTTTGTGACTGGAGGTGATGATGAAAACGAACTCATCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - caatctc
- - - - - - - - - - - - - - -gaaagag
- - - - - - - - - - - - - - - - - - -aaagata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcctag