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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttggcattttgtaagagattggattgtgactgtttgcaggccctcgatacacataagattatatgctgactgtaattaatggtttgctgcattggttcagGTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCTTCAAGTTCCCAGAAAACACTGTGGAGCTTTATGCTGAGAAAGTTAACAA

Basic information

species Vitis vinifera
transcript Vv09s0002g01460.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g01460.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: PP1S31_178V6.1 (Physcomitrella patens), 3'ss of exon 2
--------------------------------ttggcattttgtaagagattggattgtgactgtttgcaggccctcgatacacataagattatatgctgactgtaattaatggtttgctgcattggtt-cagGTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCTTCAAGTTCCCAGAAAACACTGTGGAGCTTTATGCTGAGAAAGTTAACAA
                                  | | | || ||  |    | |   | |  | ||  ||||    |  |    | |   |||  | | |  |  ||||| |||  |  |  |||  | |||||||||||||| | || || |||||||||||||| || ||||||||||| ||| |||| || ||   ||| |||||| | || |||||||| || |||||
gtaggtaaccagctctgtcaagttcatcggtgacgtcgtgttctagaacgaagaaagatcagggcttttaggc----ggaattttttatcgtatgagttcagag-gattaa-ggtagggcgtgttgtctgcagGTGAGAAGGGACGCAGGATCAGGGAATTGACTTCCGTGGTTCAGAAACGGTTCCAGTTTCCTGAGGGCACAGTGGAGTTGTACGCTGAGAAGGTGAACAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71858369|gb|DT007424.1|DT007424
EST:     AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCG                         GTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
genomic: AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCGgtaagatcta ... attggttcagGTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
EST: gi|37189512|gb|CF608861.1|CF608861
EST:     AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCG                         GTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
genomic: AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCGgtaagatcta ... attggttcagGTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
EST: gi|71859050|gb|DT008105.1|DT008105
EST:     AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCG                         GTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
genomic: AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCGgtaagatcta ... attggttcagGTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
EST: gi|110362184|gb|EC925700.1|EC925700
EST:     AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCG                         GTGAGAAGGGAAGAAGAATTAGGGAATTAACTTCTGTTGTTCAGAAACGCT
genomic: AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCGgtaagatcta ... attggttcagGTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
EST: gi|77587480|gb|DV222899.1|DV222899
EST:     AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCG                         GTGAGAAGGGAAGAAGAATTAGGGAATTAACTTCTGTTGTTCAGAAACGCT
genomic: AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCGgtaagatcta ... attggttcagGTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
EST: gi|71859949|gb|DT009004.1|DT009004
EST:     AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCG                         GTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
genomic: AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCGgtaagatcta ... attggttcagGTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
EST: gi|110687019|gb|EE064061.1|EE064061
EST:     AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCG                         GTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
genomic: AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCGgtaagatcta ... attggttcagGTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
EST: gi|110703210|gb|EE079857.1|EE079857
EST:     AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCG                         GTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
genomic: AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCGgtaagatcta ... attggttcagGTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
EST: gi|161709426|gb|FC059697.1|FC059697
EST:     AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCG                         GTGAGAAGGGAAGAAGAATTAGGGAATTAACTTCTGTTGTTCAGAAACGCT
genomic: AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCGgtaagatcta ... attggttcagGTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
EST: gi|110361538|gb|EC925020.1|EC925020
EST:     ATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCG                         GTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
genomic: ATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCGgtaagatcta ... attggttcagGTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
EST: gi|161721504|gb|FC070070.1|FC070070
EST:     AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCG                         GTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
genomic: AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCGgtaagatcta ... attggttcagGTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
EST: gi|161707867|gb|FC056940.1|FC056940
EST:     AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCG                         GTGAGAAGGGAAGAAGAATTAGGGAATTAACTTCTGTTGTTCAGAAACGCT
genomic: AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCGgtaagatcta ... attggttcagGTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
EST: gi|110689519|gb|EE065813.1|EE065813
EST:     AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCG                         GTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
genomic: AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCGgtaagatcta ... attggttcagGTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
EST: gi|161713092|gb|FC064279.1|FC064279
EST:     AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCG                         GTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
genomic: AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCGgtaagatcta ... attggttcagGTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
EST: gi|71855755|gb|DT004810.1|DT004810
EST:     AATGAGGACTGAGATCATCATTAGGGCTATTCGAACTCAGAACGTGCTCG                         GTGAGAAGGGAAGAAGAATTAGGGAATTAACTTCTGTTGTTCAGAAACGCT
genomic: AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCGgtaagatcta ... attggttcagGTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
EST: gi|110367587|gb|EC931527.1|EC931527
EST:     AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCG                         GTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
genomic: AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCGgtaagatcta ... attggttcagGTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
EST: gi|71872575|gb|DT021630.1|DT021630
EST:     AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCG                         GTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
genomic: AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCGgtaagatcta ... attggttcagGTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
EST: gi|294965438|gb|GW837153.1|GW837153
EST:     AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGCGCTCG                         GTGAGAAGGGAAGAACGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGC
genomic: AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCGgtaagatcta ... attggttcagGTGAGAAGGGAAGAA-GAATTAGGGAATTGACTTCTGTTGTTCAGAAACGC
EST: gi|71858634|gb|DT007689.1|DT007689
EST:     AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCG                         GTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
genomic: AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCGgtaagatcta ... attggttcagGTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
EST: gi|71857270|gb|DT006325.1|DT006325
EST:     AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCG                         GTGAGAAGGGAAGAAGAATTAGGGAATTAACTTCTGTTGTTCAGAAACGCT
genomic: AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCGgtaagatcta ... attggttcagGTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
EST: gi|33406072|gb|CF211699.1|CF211699
EST:     AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCG                         GTGAGAAGGGAAGAAGAATTAGGGAATTAACTTCTGTTGTTCAGAAACGCT
genomic: AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCGgtaagatcta ... attggttcagGTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
EST: gi|352772836|gb|FQ470451.1|FQ470451
EST:     AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCG                         GTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
genomic: AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCGgtaagatcta ... attggttcagGTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
EST: gi|110372712|gb|EC936899.1|EC936899
EST:     AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCG                         GTGAGAAGGGAAGAAGAATTAGGGAATTAACTTCTGTTGTTCAGAAACGCT
genomic: AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCGgtaagatcta ... attggttcagGTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
EST: gi|161710820|gb|FC059430.1|FC059430
EST:     AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCG                         GTGAGAAGGGAAGAAGAATTAGGGAATTAACTTCTGTTGTTCAGAAACGCT
genomic: AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCGgtaagatcta ... attggttcagGTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
EST: gi|110419119|gb|EC985321.1|EC985321
EST:     AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCG                         GTGAGAAGGGAAGAAGAATTAGGGAATTAACTTCTGTTGTTCAGAAACGCT
genomic: AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCGgtaagatcta ... attggttcagGTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
EST: gi|71872925|gb|DT021980.1|DT021980
EST:     AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCG                         GTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
genomic: AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCGgtaagatcta ... attggttcagGTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
EST: gi|71856225|gb|DT005280.1|DT005280
EST:     AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCG                         GTGAGAAGGGAAGAAGAATTAGGGAATTAACTTCTGTTGTTCAGAAACGCT
genomic: AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCGgtaagatcta ... attggttcagGTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
EST: gi|71861764|gb|DT010819.1|DT010819
EST:     AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCG                         GTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
genomic: AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCGgtaagatcta ... attggttcagGTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
EST: gi|87585450|gb|DY474163.1|DY474163
EST:     AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCG                         GTGAGAAGGGAAGAAGAATTAGGGAATTAACTTCTGTTGTTCAGAAACGCT
genomic: AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCGgtaagatcta ... attggttcagGTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
EST: gi|71864864|gb|DT013919.1|DT013919
EST:     AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCG                         GTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
genomic: AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCGgtaagatcta ... attggttcagGTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
EST: gi|352794640|gb|FQ475138.1|FQ475138
EST:     AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCG                         GTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
genomic: AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCGgtaagatcta ... attggttcagGTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
EST: gi|71858015|gb|DT007070.1|DT007070
EST:     AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCG                         GTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
genomic: AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCGgtaagatcta ... attggttcagGTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
EST: gi|71869646|gb|DT018701.1|DT018701
EST:     AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCG                         GTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
genomic: AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCGgtaagatcta ... attggttcagGTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
EST: gi|110362746|gb|EC926298.1|EC926298
EST:     AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCG                         GTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
genomic: AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCGgtaagatcta ... attggttcagGTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
EST: gi|110389189|gb|EC954008.1|EC954008
EST:     AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCG                         GTGAGAAGGGAAGAAGAATTAGGGAATTAACTTCTGTTGTTCAGAAACGCT
genomic: AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCGgtaagatcta ... attggttcagGTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
EST: gi|110692357|gb|EE071507.1|EE071507
EST:     AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCG                         GTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
genomic: AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCGgtaagatcta ... attggttcagGTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
EST: gi|34548015|gb|CF516247.1|CF516247
EST:     AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCG                         GTGAGAAGGGAAGAAGAATTAGGGAATTAACTTCTGTTGTTCAGAAACGCT
genomic: AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCGgtaagatcta ... attggttcagGTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
EST: gi|71855075|gb|DT004130.1|DT004130
EST:     AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCG                         GTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
genomic: AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCGgtaagatcta ... attggttcagGTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
EST: gi|37189418|gb|CF608767.1|CF608767
EST:     AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCG                         GTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
genomic: AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCGgtaagatcta ... attggttcagGTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
EST: gi|71858363|gb|DT007418.1|DT007418
EST:     AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCG                         GTGAGAAGGGAAGAAGAATTAGGGAATTAACTTCTGTTGTTCAGAAACGCT
genomic: AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCGgtaagatcta ... attggttcagGTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
EST: gi|71855375|gb|DT004430.1|DT004430
EST:     AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCG                         GTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTGCAGAAACGCT
genomic: AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCGgtaagatcta ... attggttcagGTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
EST: gi|110365307|gb|EC928089.1|EC928089
EST:     AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCG                         GTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
genomic: AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCGgtaagatcta ... attggttcagGTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
EST: gi|294966521|gb|GW837656.1|GW837656
EST:     AATGAGGACTGAGATCATCATTAGGGCTACACGAACTCAGAACGTGCTCG                         GTGAGAAGGGAAGAAGAATTAGGGAATTGACCTCTGTTGTTCAGAAACGCT
genomic: AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCGgtaagatcta ... attggttcagGTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
EST: gi|110698923|gb|EE076973.1|EE076973
EST:     AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCG                         GTGAGAAGGGAAGAAGAATTAGGGAATTAACTTCTGTTGTTCAGAAACGCT
genomic: AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCGgtaagatcta ... attggttcagGTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
EST: gi|161715927|gb|FC065510.1|FC065510
EST:     AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCG                         GTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
genomic: AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCGgtaagatcta ... attggttcagGTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
EST: gi|161713167|gb|FC064317.1|FC064317
EST:     AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCG                         GTGAGAAGGGAAGAAGAATTAGGGAATTAACTTCTGTTGTTCAGAAACGCT
genomic: AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCGgtaagatcta ... attggttcagGTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
EST: gi|110687222|gb|EE064445.1|EE064445
EST:     AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCG                         GTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT
genomic: AATGAGGACTGAGATCATCATTAGGGCTACTCGAACTCAGAACGTGCTCGgtaagatcta ... attggttcagGTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatacacataagattatatgctgactgtaattaatggtttgctgcattggttcagGTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCTTCAAGTTCCCAGAAAACACTGTGGAGCTTTATGCTGAGAAAGTTAACAA
     acataagattatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttggcattttgtaagagattggattgtgactgtttgcaggccctcgatacacataagattatatgctgactgtaattaatggtttgctgcattggttcagGTGAGAAGGGAAGAAGAATTAGGGAATTGACTTCTGTTGTTCAGAAACGCTTCAAGTTCCCAGAAAACACTGTGGAGCTTTATGCTGAGAAAGTTAACAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG
- ggcattt
- - - - - -taagaga
- - - - - - - - - -tggattg
- - - - - - - - - - - - - tgactgt
- - - - - - - - - - - - - - - - -ttgcagg
- - - - - - - - - - - - - - - - - - - - - - - atacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgctgc