Sequence
atgc intronic sequence ATGC exonic sequencegttgtcaacttaaagcagttttgattcatgtaccttttttagttcaggttttccacagtttaaatcagtctaaatctttgatgttttctttctctttagGTGGTCTTTGATTGCTGGAAGATTGCCAGGTCGAACAGATAATGAGATAAAGAACTACTGGAATTCTCATTTGAGCAAGAAAATAAAGCAGGAGAAGCAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g01380.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA17G15270.1 (Glycine max), 3'ss of exon 2
--gttgtcaacttaaagca-gttttgattcatgtaccttttttagttcaggttttccacagtttaaatcagtctaaatctttgatgttttctttctctttagGTGGTCTTTGATTGCTGGAAGATTGCCAGGTCGAACAGATAATGAGATAAAGAACTACTGGAATTCTCATTTGAGCAAGAAAATAAAGCAGGAGAAGCAA
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tttttatatttctgaatcataatatgatcaaaagtccaaaactaaatccaaatcctggtgaacattataa--tgagattatggatttttttttgttgtctagGTGGTCTTTGATAGCTGGGAGACTTCCAGGACGAACAGACAATGAAATTAAGAATTACTGGAATTCTCATTTGTGCAAAAAAGTGAATCAGAAAGTGGAG
upper sequence: Vv09s0002g01380.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA05G04900.1 (Glycine max), 3'ss of exon 2
------gttgtcaacttaaagcagttttgattcatgtaccttttttagttcaggttttccacagtttaaatcagtctaaatctttgatgttttctttctctttagGTGGTCTTTGATTGCTGGAAGATTGCCAGGTCGAACAGATAATGAGATAAAGAACTACTGGAATTCTCATTTGAGCAAGAAAATAAAGCAGGAGAAGCAA
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caacatggcaatggattttatcgtaattattttgtacat-ttctgtatcataatcctcatgaagattataatgagataaag----gagtttttttttttgtctagGTGGTCTTTGATAGCTGGGAGGCTTCCAGGACGAACAGATAATGAAATTAAGAATTATTGGAATTCTCATTTGTGCAAAAAAGTGAATCAGAAAGTGGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.caggttttccacagtttaaatcagtctaaatctttgatgttttctttctctttagGTGGTCTTTGATTGCTGGAAGATTGCCAGGTCGAACAGATAATGAGATAAAGAACTACTGGAATTCTCATTTGAGCAAGAAAATAAAGCAGGAGAAGCAA
tctttgatgttttctt CT-rich tract
agtttaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttgtcaacttaaagcagttttgattcatgtaccttttttagttcaggttttccacagtttaaatcagtctaaatctttgatgttttctttctctttagGTGGTCTTTGATTGCTGGAAGATTGCCAGGTCGAACAGATAATGAGATAAAGAACTACTGGAATTCTCATTTGAGCAAGAAAATAAAGCAGGAGAAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA