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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttcttattcgtgatatttccaatgtatagtgctatttgataaactgggcatgtattatgttgatccatgttgaaaatagtagtagccaaggttatatgagaagttttgataaactaggcatgtattatgggctgattatggcttgaataacacttcatgaaattatagcaatgattttcatcttataacagGTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG

Basic information

species Vitis vinifera
transcript Vv09s0002g00170.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g00170.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os06g09290.2 (Oryza sativa), 3'ss of exon 2
gtatgtttcttattcgtgatatttccaatgtatagtgctatttgataaactgggcatgtattatgttgatccatgttgaaaatagtagtagccaaggttatatgagaagttttgataaactaggcatgtattatgggctgattatggcttgaataacacttcatgaaattatagcaatgattttcatcttataacagGTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG
                                                                                    ||  | | |||  |  |    |    |    | || ||    |||  ||  || || ||  | ||     |||        | ||  |       | | | |    ||  |||| || || || ||||| ||||| || ||| |||| || |||||||| ||||| || |||||||| ||||||||||||||||| || || |||
--------------------------------------------------------------------------------gtgtgtgctcgtcaaattcttt---gcttctcaatttaaatataactgtgctacagg-tgcttgcg-ctattccaacttgctgcaacatgctcatctgaactgttaatgaattgcagGAATTAAAGAGTCTGACACTGGATTGGCTCCACCTAGCCAGTGGGACCTTGTATCCGATAAGCAGATGATGCAGGAGGAGCAACCCCTGCAG

upper sequence: Vv09s0002g00170.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA07G05220.1 (Glycine max), 3'ss of exon 2
gtatgtttcttattcgtgatatttccaatgtatagtgctatttgataaactgggcatgtattatgttgatccatgttgaaaatagtagtagccaaggttatatgagaagttttgataaactaggcatgtattatgggctgattatggcttgaata---acacttcatgaaattatagcaatgattttcatcttataacagGTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG
                                                                                                |||  ||    |||||  |     |   |   |  ||||| |||  |   | |   |     |||| || | ||||  | ||     |  |  | ||| || |||||| ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
------------------------------------------------------------------------------------------------gttgcatttatagtttatactggttgtcctaattgtatggactggatgctgttaacacttgtacacctccttaaatgtttgct----tcctgttgttacaatagGTATAAAGGAGTCTGATACTGGTTTAGCTGCACCAAGCCAGTGGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG

upper sequence: Vv09s0002g00170.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA19G45140.1 (Glycine max), 3'ss of exon 2
gtatgtttcttattcgtgatatttccaatgtatagtgctatttgataaactgggcatgtattatgttgatccatgttgaaaatagtagtagccaaggttatatgagaagttttgataaactaggcatgtattatgggctgattatggcttgaataacacttcatgaaattatagcaatgattttcatcttataacagGTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG
                                                                                        ||       || |  | ||  |  ||||    |     || |  |   ||  |  ||  ||||  ||   |||    ||||  |||      || |  | || |   |||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
--------------------------------------------------------------------------------------gataattggtattttg-gggatttgctgattgttttaat-tgcacaaactgcatacaat--cttgtgta---cttttgtaaatgttag----atttcttttgttgttgtagGTATCAAGGAGTCTGATACTGGTTTAGCTGCACCAAGCCAGTGGGATCTTGTTTCTGATAAACAAATGATGCAGGAGGAGCAGCCTCTTCAG

upper sequence: Vv09s0002g00170.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA03G42370.2 (Glycine max), 3'ss of exon 2
gtatgtttcttattcgtgatatttccaatgtatagtgctatttgataaactgggcatgtattatgttgatccatgttgaaaatagtagtagccaaggttatatgagaagttttgataaactaggcatgtattatgggctgattatggcttgaataacacttcatgaaattatagcaatgattttcatcttataacagGTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG
                                                                                        ||       || |  | ||  |  |||| | ||     || || |   ||  | | |  ||||  ||   |||    ||||  |||      || |  | || |   |||||||||||| ||||||||||| || ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
--------------------------------------------------------------------------------------gataattggtattttg-gggatttgctgattatcttaat-tgcataaactgcatactgt--cttgtgta---cttttgtaaatgttag----atttcttttgttgttgtagGTATCAAGGAGTCTGATACTGGTTTGGCTGCACCAAGCCAGTGGGATCTTGTTTCTGATAAACAAATGATGCAGGAGGAGCAGCCTCTTCAG

upper sequence: Vv09s0002g00170.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA16G01810.1 (Glycine max), 3'ss of exon 2
gtatgtttcttattcgtgatatttccaatgtatagtgctatttgataaactgggcatgtattatgttgatccatgttgaaaatagtagtagccaaggttatatgagaagttttgataaactaggcatgtattatgggctgattatggcttgaataacacttcatgaaattatagcaatgattttcatcttataacagGTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG
                                                                                    || | |   |   || ||||   | | |     || |  ||| | | | |  |||| |||   |||| | | | | |||   |||  ||||     |  | || ||| || |||||||||||| ||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
------------------------------------------------------------------------------------gttgcatttatattt-tatgctgattgtc--ctaatt--gcacggaatctatgctg-ttaacacttgcaaacctcctca---aatgttagct----tcctgatgttacaatagGTATCAAGGAGTCTGATACTGGATTAGCAGCACCAAGCCAGTGGGATCTTGTTTCTGATAAGCAAATGATGCAGGAAGAGCAGCCTCTTCAG

upper sequence: Vv09s0002g00170.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: EFJ29161 (Selaginella moellendorffii), 3'ss of exon 2
gtatgtttcttattcgtgatatttccaatgtatagtgctatttgataaactgggcatgtattatgttgatccatgttgaaaatagtagtagccaaggttatatgagaagttttgataaactaggcatgtattatgggctgattatggcttgaataacacttcatgaaattatagcaatgatttt--catcttataacagGTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG
                                                                                                                                                              | |   ||  ||   |   |  |||   | |  | |  |||| |||||||| || || |||||  |||| || || || ||||||||||| || |||||||||||||||||||| || |||||||| || || 
-----------------------------------------------------------------------------------------------------------------------------------------------------------gtgcgttgcgatcttgctgggcttttttgagcgtgcttttccagGGATCAAGGAGTCCGACACTGGTCTAGCAGCTCCTAGCCAGTGGGATCTGGTGTCTGATAAGCAAATGATGCAAGAAGAGCAGCCACTGCAA

upper sequence: Vv09s0002g00170.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: EFJ13722 (Selaginella moellendorffii), 3'ss of exon 2
gtatgtttcttattcgtgatatttccaatgtatagtgctatttgataaactgggcatgtattatgttgatccatgttgaaaatagtagtagccaaggttatatgagaagttttgataaactaggcatgtattatgggctgattatggcttgaataacacttcatgaaattatagcaatgatttt--catcttataacagGTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG
                                                                                                                                                              | |   ||  ||   |   |  |||   | |  | |  |||| |||||||| || || |||||  |||| || || || ||||||||||| || |||||||||||||||||||| || |||||||| || || 
-----------------------------------------------------------------------------------------------------------------------------------------------------------gtgcgttgcgattttgctgggcttttttgagcgtgcttttccagGGATCAAGGAGTCCGACACTGGTCTAGCAGCTCCTAGCCAGTGGGATCTGGTGTCTGATAAGCAAATGATGCAAGAAGAGCAGCCACTGCAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351055270|gb|FQ441868.1|FQ441868
EST:     AACAGAGAAGGAAATTAAAGAAATGGCTAAGAAGGTCAACGATTTATGTG                         GTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTG
genomic: AACAGAGAAGGAAATTAAAGAAATGGCTAAGAAGGTCAACGATTTATGTGgtatgtttct ... cttataacagGTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTG
EST: gi|110381635|gb|EC934981.1|EC934981
EST:     AACAGAGAAGGAAATTAAAGAAATGGCTAAGAAGGTCAACGATTTATGTG                         GTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTG
genomic: AACAGAGAAGGAAATTAAAGAAATGGCTAAGAAGGTCAACGATTTATGTGgtatgtttct ... cttataacagGTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTG
EST: gi|46917525|gb|CN546854.1|CN546854
EST:     AACAGAGAAGGAAATTAAAGAAATGGCTAAGAAGGTCAACGATTTATGTG                         GTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTG
genomic: AACAGAGAAGGAAATTAAAGAAATGGCTAAGAAGGTCAACGATTTATGTGgtatgtttct ... cttataacagGTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTG
EST: gi|351037539|gb|FQ462522.1|FQ462522
EST:     AACAGAGAAGGAAATTAAAGAAATGGCTAAGAAGGTCAACGATTTATGTG                         GTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTG
genomic: AACAGAGAAGGAAATTAAAGAAATGGCTAAGAAGGTCAACGATTTATGTGgtatgtttct ... cttataacagGTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTG
EST: gi|71858037|gb|DT007092.1|DT007092
EST:     AACAGAGAAGGAAATTAAAGAAATGGCTAAGAAGGTCAACGATTTATGTG                         GTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTG
genomic: AACAGAGAAGGAAATTAAAGAAATGGCTAAGAAGGTCAACGATTTATGTGgtatgtttct ... cttataacagGTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTG
EST: gi|71863099|gb|DT012154.1|DT012154
EST:     AACAGAGAAGGAAATTAAAGAAATGGCTAAGAAGGTCAACGATTTATGTG                         GTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTG
genomic: AACAGAGAAGGAAATTAAAGAAATGGCTAAGAAGGTCAACGATTTATGTGgtatgtttct ... cttataacagGTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTG
EST: gi|352798958|gb|FQ480807.1|FQ480807
EST:     AACAGAGAAGGAAATTAAAGAAATGGCTAAGAAGGTCAACGATTTATGTG                         GTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTG
genomic: AACAGAGAAGGAAATTAAAGAAATGGCTAAGAAGGTCAACGATTTATGTGgtatgtttct ... cttataacagGTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTG
EST: gi|110700764|gb|EE077702.1|EE077702
EST:     AACAGAGAAGGAAATTAAAGAAATGGCTAAGAAGGTCAACGATTTATGTG                         GTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTG
genomic: AACAGAGAAGGAAATTAAAGAAATGGCTAAGAAGGTCAACGATTTATGTGgtatgtttct ... cttataacagGTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTG
EST: gi|71860941|gb|DT009996.1|DT009996
EST:     AACAGAGAAGGAAATTAAAGAAATGGCTAAGAAGGTCAACGATTTATGTG                         GTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTG
genomic: AACAGAGAAGGAAATTAAAGAAATGGCTAAGAAGGTCAACGATTTATGTGgtatgtttct ... cttataacagGTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTG
EST: gi|294966728|gb|GW837747.1|GW837747
EST:     AACAGAGAAGGAAATTAAAGAAATGGCTAAGAAGGTCAATGATTTATGTG                         GTATCAAGGAGTCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTG
genomic: AACAGAGAAGGAAATTAAAGAAATGGCTAAGAAGGTCAACGATTTATGTGgtatgtttct ... cttataacagGTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTG
EST: gi|352786546|gb|FQ479753.1|FQ479753
EST:     AACAGAGAAGGAAATTAAAGAAATGGCTAAGAAGGTCAACGATTTATGTG                         GTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTG
genomic: AACAGAGAAGGAAATTAAAGAAATGGCTAAGAAGGTCAACGATTTATGTGgtatgtttct ... cttataacagGTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTG
EST: gi|110710904|gb|EE087489.1|EE087489
EST:     AACAGAGAAGGAAATTAAAGAAATGGCTAAGAAGGTCAACGATTTATGTG                         GTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTG
genomic: AACAGAGAAGGAAATTAAAGAAATGGCTAAGAAGGTCAACGATTTATGTGgtatgtttct ... cttataacagGTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTG
EST: gi|351038545|gb|FQ464411.1|FQ464411
EST:     AACAGAGAAGGAAATTAAAGAAATGGCTAAGAAGGTCAACGATTTATGTG                         GTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTG
genomic: AACAGAGAAGGAAATTAAAGAAATGGCTAAGAAGGTCAACGATTTATGTGgtatgtttct ... cttataacagGTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTG
EST: gi|110424138|gb|EC990494.1|EC990494
EST:     AACAGAGAAGGAAATTAAAGAAATGGCTAAGAAGGTCAACGATTTATGTG                         GTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTG
genomic: AACAGAGAAGGAAATTAAAGAAATGGCTAAGAAGGTCAACGATTTATGTGgtatgtttct ... cttataacagGTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTG
EST: gi|110718922|gb|EE096307.1|EE096307
EST:     AACAGAGAAGGAAATTAAAGAAATGGCTAAGAAGGTCAACGATTTATGTG                         GTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTG
genomic: AACAGAGAAGGAAATTAAAGAAATGGCTAAGAAGGTCAACGATTTATGTGgtatgtttct ... cttataacagGTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTG
EST: gi|37183695|gb|CF603049.1|CF603049
EST:     AACAGAGAAGGAAATTAAAGAAATGGCTAAGAAGGTCAACGATTTATGTG                         GTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTG
genomic: AACAGAGAAGGAAATTAAAGAAATGGCTAAGAAGGTCAACGATTTATGTGgtatgtttct ... cttataacagGTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTG
EST: gi|71858529|gb|DT007584.1|DT007584
EST:     AACAGAGAAGGAAATTAAAGAAATGGCTAAGAAGGTCAACGATTTATGTG                         GTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTG
genomic: AACAGAGAAGGAAATTAAAGAAATGGCTAAGAAGGTCAACGATTTATGTGgtatgtttct ... cttataacagGTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTG
EST: gi|294963909|gb|GW836784.1|GW836784
EST:     AACAGAGAAGGAAATTAAAGAAATGGCTAAGAAGGTCAACGATTTATGTG                         GTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTG
genomic: AACAGAGAAGGAAATTAAAGAAATGGCTAAGAAGGTCAACGATTTATGTGgtatgtttct ... cttataacagGTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTG
EST: gi|161718866|gb|FC067339.1|FC067339
EST:     AACAGAGAAGGAAATTAAAGAAATGGCTAAGAAGGTCAACGATTTATGTG                         GTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTG
genomic: AACAGAGAAGGAAATTAAAGAAATGGCTAAGAAGGTCAACGATTTATGTGgtatgtttct ... cttataacagGTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTG
EST: gi|110688813|gb|EE067797.1|EE067797
EST:     AACAGAGAAGGAAATTAAAGAAATGGCTAAGAAGGTCAACGATTTATGTG                         GTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTG
genomic: AACAGAGAAGGAAATTAAAGAAATGGCTAAGAAGGTCAACGATTTATGTGgtatgtttct ... cttataacagGTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTG
EST: gi|71864317|gb|DT013372.1|DT013372
EST:     AACAGAGAAGGAAATTAAAGAAATGGCTAAGAAGGTCAACGATTTATGTG                         GTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTG
genomic: AACAGAGAAGGAAATTAAAGAAATGGCTAAGAAGGTCAACGATTTATGTGgtatgtttct ... cttataacagGTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTG
EST: gi|71859940|gb|DT008995.1|DT008995
EST:     AACAGAGAAGGAAATTAAAGAAATGGCTAAGAAGGTCAACGATTTATGTG                         GTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTG
genomic: AACAGAGAAGGAAATTAAAGAAATGGCTAAGAAGGTCAACGATTTATGTGgtatgtttct ... cttataacagGTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTG
EST: gi|351047798|gb|FQ459018.1|FQ459018
EST:     AACAGAGAAGGAAATTAAAGAAATGGCTAAGAAGGTCAACGATTTATGTG                         GTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTG
genomic: AACAGAGAAGGAAATTAAAGAAATGGCTAAGAAGGTCAACGATTTATGTGgtatgtttct ... cttataacagGTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTG
EST: gi|71861519|gb|DT010574.1|DT010574
EST:     AACAGAGAAGGAAATTAAAGAAATGGCTAAGAAGGTCAACGATTTATGTG                         GTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTG
genomic: AACAGAGAAGGAAATTAAAGAAATGGCTAAGAAGGTCAACGATTTATGTGgtatgtttct ... cttataacagGTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTG
EST: gi|110727512|gb|EE104359.1|EE104359
EST:     AACAGAGAAGGAAATTAAAGAAATGGCTAAGAAGGTCAACGATTTATGTG                         GTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTG
genomic: AACAGAGAAGGAAATTAAAGAAATGGCTAAGAAGGTCAACGATTTATGTGgtatgtttct ... cttataacagGTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTG
EST: gi|71861538|gb|DT010593.1|DT010593
EST:     AACAGAGAAGGAAATTAAAGAAATGGCTAAGAAGGTCAACGATTTATGTG                         GTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTG
genomic: AACAGAGAAGGAAATTAAAGAAATGGCTAAGAAGGTCAACGATTTATGTGgtatgtttct ... cttataacagGTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTG
EST: gi|71863095|gb|DT012150.1|DT012150
EST:     AACAGAGAAGGAAATTAAAGAAATGGCTAAGAAGGTCAACGATTTATGTG                         GTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTG
genomic: AACAGAGAAGGAAATTAAAGAAATGGCTAAGAAGGTCAACGATTTATGTGgtatgtttct ... cttataacagGTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTG
EST: gi|110686619|gb|EE064467.1|EE064467
EST:     AACAGAGAAGGAAATTAAAGAAATGGCTAAGAAGGTCAACGATTTATGTG                         GTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTG
genomic: AACAGAGAAGGAAATTAAAGAAATGGCTAAGAAGGTCAACGATTTATGTGgtatgtttct ... cttataacagGTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTG
EST: gi|161715740|gb|FC066144.1|FC066144
EST:     AACAGAGAAGGAAATTAAAGAAATGGCTAAGAAGGTCAACGATTTATGTG                         GTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTG
genomic: AACAGAGAAGGAAATTAAAGAAATGGCTAAGAAGGTCAACGATTTATGTGgtatgtttct ... cttataacagGTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatggcttgaataacacttcatgaaattatagcaatgattttcatcttataacagGTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG
        gaataac  putative branch site (score: 2)
                                      ttttcatctt  putative PPT
                                     attttcatcttataa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgtttcttattcgtgatatttccaatgtatagtgctatttgataaactgggcatgtattatgttgatccatgttgaaaatagtagtagccaaggttatatgagaagttttgataaactaggcatgtattatgggctgattatggcttgaataacacttcatgaaattatagcaatgattttcatcttataacagGTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
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