1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtaacttttggtttgtctgtttatttccatgttaatggtatcctaagcatcacagatgctgttgattcataacatattgtctgttattcttttctatcagAGAATTATCAGGTCTTCGACTTACTGGGTCAATGGGCTACCAGCTCACAAGTTTGACATCAGTAGTCAACCT
species | Vitis vinifera |
transcript | Vv09s0002g00150.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGGGAGTCATGGCAAGGCATTACATGCAAAGGCTCAAGAGTCACAGAAAT AGAATTATCAGGTCTTCGACTTACTGGGTCAATGGGCTACCAGCTCACAAGEST: gi|110712955|gb|EE088453.1|EE088453
genomic: GGGGAGTCATGGCAAGGCATTACATGCAAAGGCTCAAGAGTCACAGAAATgtaacttttg ... tttctatcagAGAATTATCAGGTCTTCGACTTACTGGGTCAATGGGCTACCAGCTCACAAG
EST: GGGGAGTCATGGCAAGGCATTACATGCAAAGGCTCAAGAGTCACAGAAAT AGAATTATCAGGTCTTCGACTTACTGGGTCAATGGGCTACCAGCTCACAAG
genomic: GGGGAGTCATGGCAAGGCATTACATGCAAAGGCTCAAGAGTCACAGAAATgtaacttttg ... tttctatcagAGAATTATCAGGTCTTCGACTTACTGGGTCAATGGGCTACCAGCTCACAAG
agcatcacagatgctgttgattcataacatattgtctgttattcttttctatcagAGAATTATCAGGTCTTCGACTTACTGGGTCAATGGGCTACCAGCTCACAAGTTTGACATCAGTAGTCAACCT
tcataac putative branch site (score: 2)
tctgttattcttttct putative PPT
attcataacatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacttttggtttgtctgtttatttccatgttaatggtatcctaagcatcacagatgctgttgattcataacatattgtctgttattcttttctatcagAGAATTATCAGGTCTTCGACTTACTGGGTCAATGGGCTACCAGCTCACAAGTTTGACATCAGTAGTCAACCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA