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gttttctggacttttggatcttatttttgttgttgattgagtcaatttaagtgatttggattttgagctcctgctaaatctcggacgatacattgatttttttttttttcattttttttttctcgtggggattttgagtttttgtgtttgttatttgtgtgtagCCGTGAAGTCTCAGGCACCGGATAAGGCACCGGCCGGCAGTGGTTCGAACTTCAATCAGCTTCTCGGCATTAAAGGAGCTGCCAAAGAAACG
species | Vitis vinifera |
transcript | Vv08s0105g00590.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGAGGAGACTTGTGGTTAGGGCTGCTGAGACTGATGCAAATGAAG CCGTGAAGTCTCAGGCACCGGATAAGGCACCGGCCGGCAGTGGTTCGAACTEST: gi|351018952|gb|FQ426451.1|FQ426451
genomic: GGAGGAGACTTGTGGTTAGGGCTGCTGAGACTGATGCAAATGAAGgttttctgga ... ttgtgtgtagCCGTGAAGTCTCAGGCACCGGATAAGGCACCGGCCGGCAGTGGTTCGAACT
EST: GGAGGAGACTTGTGGTTAGGGCTGCTGAGACTGATGCAAATGAAG CCGTGAAGTCTCAGGCACCGGATAAGGCACCGGCCGGCAGTGGTTCGAACTEST: gi|37190125|gb|CF609474.1|CF609474
genomic: GGAGGAGACTTGTGGTTAGGGCTGCTGAGACTGATGCAAATGAAGgttttctgga ... ttgtgtgtagCCGTGAAGTCTCAGGCACCGGATAAGGCACCGGCCGGCAGTGGTTCGAACT
EST: GGAGGAGACTTGTGGTTAGGGCTGCTGAGACTGATGCAAATGAAG CCGTGAAGTCTCAGGCACCGGATAAGGCACCGGCCGGCAGTGGTTCGAACTEST: gi|161709684|gb|FC060175.1|FC060175
genomic: GGAGGAGACTTGTGGTTAGGGCTGCTGAGACTGATGCAAATGAAGgttttctgga ... ttgtgtgtagCCGTGAAGTCTCAGGCACCGGATAAGGCACCGGCCGGCAGTGGTTCGAACT
EST: GGAGGAGACTTGTGGTTAGGGCTGCTGAGACTGATGCAAATGAAG CCGTGAAGTCTCAGGCACCGGATAAGGCACCGGCCGGCAGTGGTTCGAACTEST: gi|352785482|gb|FQ477696.1|FQ477696
genomic: GGAGGAGACTTGTGGTTAGGGCTGCTGAGACTGATGCAAATGAAGgttttctgga ... ttgtgtgtagCCGTGAAGTCTCAGGCACCGGATAAGGCACCGGCCGGCAGTGGTTCGAACT
EST: GGAGGAGACTTGTGGTTAGGGCTGCTGAGACTGATGCAAATGAAG CCGTGAAGTCTCAGGCACCGGATAAGGCACCGGCCGGCAGTGGTTCGAACTEST: gi|349830671|gb|FQ416969.1|FQ416969
genomic: GGAGGAGACTTGTGGTTAGGGCTGCTGAGACTGATGCAAATGAAGgttttctgga ... ttgtgtgtagCCGTGAAGTCTCAGGCACCGGATAAGGCACCGGCCGGCAGTGGTTCGAACT
EST: GGAGGAGACTTGTGGTTAGGGCTGCTGAGACTGATGCAAATGAAG CCGTGAAGTCTCAGGCACCGGATAAGGCACCGGCCGGCAGTGGTTCGAACTEST: gi|161716004|gb|FC065529.1|FC065529
genomic: GGAGGAGACTTGTGGTTAGGGCTGCTGAGACTGATGCAAATGAAGgttttctgga ... ttgtgtgtagCCGTGAAGTCTCAGGCACCGGATAAGGCACCGGCCGGCAGTGGTTCGAACT
EST: GGAGGAGACTTGTGGTTAGGGCTGCTGAGACTGATGCAAATGAAG CCGTGAAGTCTCAGGCACCGGATAAGGCACCGGCCGGCAGTGGTTCGAACTEST: gi|351033623|gb|FQ447782.1|FQ447782
genomic: GGAGGAGACTTGTGGTTAGGGCTGCTGAGACTGATGCAAATGAAGgttttctgga ... ttgtgtgtagCCGTGAAGTCTCAGGCACCGGATAAGGCACCGGCCGGCAGTGGTTCGAACT
EST: GGAGGAGACTTGTGGTTAGGGCTGCTGAGACTGATGCAAATGAAG CCGTGAAGTCTCAGGCACCGGATAAGGCACCGGCCGGCAGTGGTTCGAACTEST: gi|351041270|gb|FQ447397.1|FQ447397
genomic: GGAGGAGACTTGTGGTTAGGGCTGCTGAGACTGATGCAAATGAAGgttttctgga ... ttgtgtgtagCCGTGAAGTCTCAGGCACCGGATAAGGCACCGGCCGGCAGTGGTTCGAACT
EST: GGAGGAGACTTGTGGTTAGGGCTGCTGAGACTGATGCAAATGAAG CCGTGAAGTCTCAGGCACCGGATAAGGCACCGGCCGGCAGTGGTTCGAACTEST: gi|352791138|gb|FQ477465.1|FQ477465
genomic: GGAGGAGACTTGTGGTTAGGGCTGCTGAGACTGATGCAAATGAAGgttttctgga ... ttgtgtgtagCCGTGAAGTCTCAGGCACCGGATAAGGCACCGGCCGGCAGTGGTTCGAACT
EST: GGAGGAGACTTGTGGTTAGGGCTGCTGAGACTGATGCAAATGAAG CCGTGAAGTCTCAGGCACCGGATAAGGCACCGGCCGGCAGTGGTTCGAACTEST: gi|351028530|gb|FQ444811.1|FQ444811
genomic: GGAGGAGACTTGTGGTTAGGGCTGCTGAGACTGATGCAAATGAAGgttttctgga ... ttgtgtgtagCCGTGAAGTCTCAGGCACCGGATAAGGCACCGGCCGGCAGTGGTTCGAACT
EST: GGAGGAGACTTGTGGTTAGGGCTGCTGAGACTGATGCAAATGAAG CCGTGAAGTCTCAGGCACCGGATAAGGCACCGGCCGGCAGTGGTTCGAACTEST: gi|351014975|gb|FQ444264.1|FQ444264
genomic: GGAGGAGACTTGTGGTTAGGGCTGCTGAGACTGATGCAAATGAAGgttttctgga ... ttgtgtgtagCCGTGAAGTCTCAGGCACCGGATAAGGCACCGGCCGGCAGTGGTTCGAACT
EST: GGAGGAGACTTGTGGTTAGGGCTGCTGAGACTGATGCAAATGAAG CCGTGAAGTCTCAGGCACCGGATAAGGCACCGGCCGGCAGTGGTTCGAACTEST: gi|351017844|gb|FQ436197.1|FQ436197
genomic: GGAGGAGACTTGTGGTTAGGGCTGCTGAGACTGATGCAAATGAAGgttttctgga ... ttgtgtgtagCCGTGAAGTCTCAGGCACCGGATAAGGCACCGGCCGGCAGTGGTTCGAACT
EST: GGAGGAGACTTGTGGTTAGGGCTGCTGAGACTGATGCAAATGAAG CCGTGAAGTCTCAGGCACCGGATAAGGCACCGGCCGGCAGTGGTTCGAACTEST: gi|110712697|gb|EE087971.1|EE087971
genomic: GGAGGAGACTTGTGGTTAGGGCTGCTGAGACTGATGCAAATGAAGgttttctgga ... ttgtgtgtagCCGTGAAGTCTCAGGCACCGGATAAGGCACCGGCCGGCAGTGGTTCGAACT
EST: GGAGGAGACTTGTGGTTAGGGCTGCTGAGACTGATGCAAATGAAG CCGTGAAGTCTCAGGCACCGGATAAGGCACCGGCCGGCAGTGGTTCGAACTEST: gi|110698374|gb|EE075807.1|EE075807
genomic: GGAGGAGACTTGTGGTTAGGGCTGCTGAGACTGATGCAAATGAAGgttttctgga ... ttgtgtgtagCCGTGAAGTCTCAGGCACCGGATAAGGCACCGGCCGGCAGTGGTTCGAACT
EST: GGAGGAGACTTGTGGTTAGGGCTGCTGAGACTGATGCAAATGAAG CCGTGAAGTCTCAGGCACCGGATAAGGCACCGGCCGGCAGTGGTTCGAACT
genomic: GGAGGAGACTTGTGGTTAGGGCTGCTGAGACTGATGCAAATGAAGgttttctgga ... ttgtgtgtagCCGTGAAGTCTCAGGCACCGGATAAGGCACCGGCCGGCAGTGGTTCGAACT
cattttttttttctcgtggggattttgagtttttgtgtttgttatttgtgtgtagCCGTGAAGTCTCAGGCACCGGATAAGGCACCGGCCGGCAGTGGTTCGAACTTCAATCAGCTTCTCGGCATTAAAGGAGCTGCCAAAGAAACG
tttgttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttctggacttttggatcttatttttgttgttgattgagtcaatttaagtgatttggattttgagctcctgctaaatctcggacgatacattgatttttttttttttcattttttttttctcgtggggattttgagtttttgtgtttgttatttgtgtgtagCCGTGAAGTCTCAGGCACCGGATAAGGCACCGGCCGGCAGTGGTTCGAACTTCAATCAGCTTCTCGGCATTAAAGGAGCTGCCAAAGAAACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
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