Sequence
atgc intronic sequence ATGC exonic sequence...cctttgttaagttgacttgtttgtgtgatatgcaagaagattggtgtacagttatagatgcataaaaggcagcaccaactgctttctctctgtgtgacagGGAGATAGAGACCTTGCAGACTACATGAAAGATCGTAACTTCCCTTTAAACTTGGAGTCTACTATGTTTGGGCGTGTCTTGCAAGGACTAGGTTCAATTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0058g01450.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA16G34620.1 (Glycine max), 3'ss of exon 2
cctttgttaa--gttgacttgtttgtgtgatatgcaagaag-attggtgtacagtt-atagatgcata-aaaggcagcaccaactgctttctctctgtgtgacagGGAGATAGAGACCTTGCAGACTACATGAAAGATCGTAACTTCCCTTTAAACTTGGAGTCTACTATGTTTGGGCGTGTCTTGCAAGGACTAGGTTCAATTG
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---gtgttaaatgttatcttgaaaatataaattgaatttatcatctttgtatagtttattccttcatttacataaattaataggaggattgcct--gtgtcacagGGAGATCGTACTCTTGCTGATTACATGAAAGATCGCAACTTTCCTTCAAACTTGGAATCTGTGATGTTTGGACGTGTCTTGCAAGGAGTAGACTCTTCGA
upper sequence: Vv08s0058g01450.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA03G00450.1 (Glycine max), 3'ss of exon 2
-----------------------------------------------------------------------cctttgttaagttgacttgtttgtgtgatatgcaaga---agattgg-tgtacagttatagatgcataaaaggcagcacc------aactgcttt-----ctctctgtgtgacagGGAGATAGAGACCTTGCAGACTACATGAAAGATCGTAACTTCCCTTTAAACTTGGAGTCTACTATGTTTGGGCGTGTCTTGCAAGGACTAGGTTCAATTG
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gtgctctagcttgtatttctgttgcataatggataaatatgcactatttaactgtcaggagttttataaatattttgttcaggtggtgc-taaatgccatcttgaaaatataaattgaatttgtcatcttagtctagtttattccttcatttacttaaattaattcgagggttgcccctgtcgcagGGAGATCGTACTCTTGCTGATTACATGAAAGATCGCAACTTTCCTTCAAACTTGGAATCAGTGATGTTTGGACGTGTCTTGCAAGGTGTGGACTCTTCGA
upper sequence: Vv08s0058g01450.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA18G44800.1 (Glycine max), 3'ss of exon 2
cctttgttaagttgacttgtttgtgtgatatgcaagaagattggtgtacagtt-atagatgc-ataaaaggcagcaccaactgcttt-ctctctgtgtgacagGGAGATAGAGACCTTGCAGACTACATGAAAGATCGTAACTTCCCTTTAAACTTGGAGTCTACTATGTTTGGGCGTGTCTTGCAAGGACTAGGTTCAATTG
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-ttttaatggattgcataacttaaagcataca-gataagctccaaacatattttatatataccaactattccaccactaattgcagggttgtccacatcacaGGGAGGCCGATCTCTTGCTGATTACATGGCTGATCAAAGCTTCCCTTCAAACTTAGAGTCTATCATGTTTGGACGTGTCTTGCAAGGCGTCGACTCTTCT-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|351022402|gb|FQ445177.1|FQ445177EST: CAAATTCACAATTTACAAAGGGTGGAAAATGGCTTGTCTGGAAATTCGAG GGAGATAGAGACCTCGCAGACTACATGAAAGATCGTAACTTCCCTTTAAAC
genomic: CAAATTCACAATTTACAAAGGGTGGAAAATGGCTTGTCTGGAAATTCGAGgtactctagc ... tgtgtgacagGGAGATAGAGACCTTGCAGACTACATGAAAGATCGTAACTTCCCTTTAAAC
EST:
gi|110698906|gb|EE076940.1|EE076940EST: CAAATTCACAATTTACAAAGGGTGGAAAATGGCTTGTCTGGAAATTCGAG GGAGATAGAGACCTCGCAGACTACATGAAAGATCGTAACTTCCCTTTAAAC
genomic: CAAATTCACAATTTACAAAGGGTGGAAAATGGCTTGTCTGGAAATTCGAGgtactctagc ... tgtgtgacagGGAGATAGAGACCTTGCAGACTACATGAAAGATCGTAACTTCCCTTTAAAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtacagttatagatgcataaaaggcagcaccaactgctttctctctgtgtgacagGGAGATAGAGACCTTGCAGACTACATGAAAGATCGTAACTTCCCTTTAAACTTGGAGTCTACTATGTTTGGGCGTGTCTTGCAAGGACTAGGTTCAATTG
ctgctttctctctgt CT-rich tract
ttatagat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cctttgttaagttgacttgtttgtgtgatatgcaagaagattggtgtacagttatagatgcataaaaggcagcaccaactgctttctctctgtgtgacagGGAGATAGAGACCTTGCAGACTACATGAAAGATCGTAACTTCCCTTTAAACTTGGAGTCTACTATGTTTGGGCGTGTCTTGCAAGGACTAGGTTCAATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - tgacttg
- - - - - - - - - - -tgtgtga
- - - - - - - - - - - - - - - -gcaagaa
- - - - - - - - - - - - - - - - - - - - -tggtgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cagcacc