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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtatccaatggtggatattggtttggggtgttgaatcagcagggaggttgatggaggtgtgttttccagGTGGTGTTTTTCACTAATTCAGGCACGGAGGCGAATGAGTTGGCGATGATGATGGCGAGGCTATACACTGGGTGCAACGACATAATATCACTGAGGAACG

Basic information

species Vitis vinifera
transcript Vv08s0058g00930.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352794561|gb|FQ475059.1|FQ475059
EST:     TTGCTGATTTCGCGGAGGCGCTGGCCTCCAAGATGCCTGGAGATCTCAAG                         GTGGTGTTTTTCACTAATTCAGGCACGGAGGCGAATGAGTTGGCGATGATG
genomic: TTGCTGATTTCGCGGAGGCGCTGGCCTCCAAGATGCCTGGAGATCTCAAGgtatgtatcc ... tgttttccagGTGGTGTTTTTCACTAATTCAGGCACGGAGGCGAATGAGTTGGCGATGATG
EST: gi|71877180|gb|DT026235.1|DT026235
EST:     TTGCTGATTTCGCGGAGGCGCTGGCCTCCAAGATGCCTGGAGATCTCAAG                         GTGGTGTTTTTCACTAATTCAGGCACGGAGGCGAATGAGTTGGCGATGATG
genomic: TTGCTGATTTCGCGGAGGCGCTGGCCTCCAAGATGCCTGGAGATCTCAAGgtatgtatcc ... tgttttccagGTGGTGTTTTTCACTAATTCAGGCACGGAGGCGAATGAGTTGGCGATGATG
EST: gi|33407556|gb|CF213183.1|CF213183
EST:     TTGCTGATTTCGCGGAGGCGCTGGCCTCCAAGATGCCTGGAGATCTCAAG                         GTGGTGTTTTTCACTAATTCAGGCACGGAGGCGAATGAGTTGGCGATGATG
genomic: TTGCTGATTTCGCGGAGGCGCTGGCCTCCAAGATGCCTGGAGATCTCAAGgtatgtatcc ... tgttttccagGTGGTGTTTTTCACTAATTCAGGCACGGAGGCGAATGAGTTGGCGATGATG
EST: gi|352795138|gb|FQ477248.1|FQ477248
EST:     TTGCTGATTTCGGGGAGGCGCTGGCCTCCAAGATGCCTGGAGATCTCAAG                         GTGGTGTTTTTCACTAATTCAGGCACGGAGGCGAATGAGTTGGCAATGATT
genomic: TTGCTGATTTCGCGGAGGCGCTGGCCTCCAAGATGCCTGGAGATCTCAAGgtatgtatcc ... tgttttccagGTGGTGTTTTTCACTAATTCAGGCACGGAGGCGAATGAGTTGGCGATGATG
EST: gi|71871037|gb|DT020092.1|DT020092
EST:     TTGCTGATTTCGCGGAGGCGCTGGCCTCCAAGATGCCTGGAGATCTCAAG                         GTGGTGTTTTTCACTAATTCA
genomic: TTGCTGATTTCGCGGAGGCGCTGGCCTCCAAGATGCCTGGAGATCTCAAGgtatgtatcc ... tgttttccagGTGGTGTTTTTCACTAATTCA
EST: gi|33409685|gb|CF215312.1|CF215312
EST:     TTGCTGATTTCGCGGAGGCGCTGGCCTCCAAGATGCCTGGAGATCTCAAG                         GTGGTGTTTTTCACTAATTCAGGCACGGAGGCGAATGAGTTGGCGATGATG
genomic: TTGCTGATTTCGCGGAGGCGCTGGCCTCCAAGATGCCTGGAGATCTCAAGgtatgtatcc ... tgttttccagGTGGTGTTTTTCACTAATTCAGGCACGGAGGCGAATGAGTTGGCGATGATG
EST: gi|161712512|gb|FC061817.1|FC061817
EST:     TTGCTGATTTCGCGGAGGCGCTGGCCTCCAAGATGCCTGGAGATCTCAAG                         GTGGTGTTTTTCACTAATTCAGGCACGGAGGCGAATGAGTTGGCGATGATG
genomic: TTGCTGATTTCGCGGAGGCGCTGGCCTCCAAGATGCCTGGAGATCTCAAGgtatgtatcc ... tgttttccagGTGGTGTTTTTCACTAATTCAGGCACGGAGGCGAATGAGTTGGCGATGATG
EST: gi|161721151|gb|FC071026.1|FC071026
EST:     TTGCTGATTTCGCGGAGGCGCTGGCCTCCAAGATGCCTGGAGATCTCAAG                         GTGGTGTTTTTCACTAATTCAGGCACGGAGGCGAATGAGTTGGCGATGATG
genomic: TTGCTGATTTCGCGGAGGCGCTGGCCTCCAAGATGCCTGGAGATCTCAAGgtatgtatcc ... tgttttccagGTGGTGTTTTTCACTAATTCAGGCACGGAGGCGAATGAGTTGGCGATGATG
EST: gi|110698597|gb|EE076279.1|EE076279
EST:     TTGCTGATTTCGCGGAGGCGCTGGCCTCCAAGATGCCTGGAGATCTCAAG                         GTGGTGTTTTTCACTAATTCAGGCACGGAGGCGAATGAGTTGGCGATGATG
genomic: TTGCTGATTTCGCGGAGGCGCTGGCCTCCAAGATGCCTGGAGATCTCAAGgtatgtatcc ... tgttttccagGTGGTGTTTTTCACTAATTCAGGCACGGAGGCGAATGAGTTGGCGATGATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atattggtttggggtgttgaatcagcagggaggttgatggaggtgtgttttccagGTGGTGTTTTTCACTAATTCAGGCACGGAGGCGAATGAGTTGGCGATGATGATGGCGAGGCTATACACTGGGTGCAACGACATAATATCACTGAGGAACG
                               ggttgat  putative branch site (score: 5)
                                             tgttttcc  putative PPT