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...ctgtgtatgcacctgcagtgatgcttctattcatcttttttcttttctttttttatatgcctataatgaataacagagaagcaatccttgatttctgcagTTGGAGGCTGGCTTGCTTCACTTTCTGTTGCAGGTTATACAGCTATAGCTGTAAGAAAAATCGTCAAGACAGAAATGATACCTGCTGAGCCCATGGAAAA
species | Vitis vinifera |
transcript | Vv08s0056g01690.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGTTAAAGATATTCCTGCAGCTTCGGGTCTCAAGATTTGTTTTATAATAG TTGGAGGCTGGCTTGCTTCACTTTCTGTTGCAGGTTATACAGCTATAGCTGEST: gi|30325643|gb|CD008905.1|CD008905
genomic: TGTTAAAGATATTCCTGCAGCTTCGGGTCTCAAGATTTGTTTTATAATAGgtatggcatt ... atttctgcagTTGGAGGCTGGCTTGCTTCACTTTCTGTTGCAGGTTATACAGCTATAGCTG
EST: TGTTAAAGATATTCCTGCAGCTTCGGGTCTCAAGATTTGTTTTATAATAG TTGGAGGCTGGCTTGCTTCACTTTCTGTTGCAGGTTATACAGCTATAGCTGEST: gi|32270950|gb|CD720109.1|CD720109
genomic: TGTTAAAGATATTCCTGCAGCTTCGGGTCTCAAGATTTGTTTTATAATAGgtatggcatt ... atttctgcagTTGGAGGCTGGCTTGCTTCACTTTCTGTTGCAGGTTATACAGCTATAGCTG
EST: TGTTAAAGATATTCCTGCAGCTTCGGGTCTCAAGATTTGTTTTATAATAG TTGGAGGCTGGCTTGCTTCACTTTCTGTTGCAGGTTATACAGCTATAGCTGEST: gi|30324300|gb|CD007562.1|CD007562
genomic: TGTTAAAGATATTCCTGCAGCTTCGGGTCTCAAGATTTGTTTTATAATAGgtatggcatt ... atttctgcagTTGGAGGCTGGCTTGCTTCACTTTCTGTTGCAGGTTATACAGCTATAGCTG
EST: TGTTAAAGATATTCCTGCAGCTTCGGGTCTCAAGATTTGTTTTATAATAG TTGGAGGCTGGCTTGCTTCACTTTCTGTTGCAGGTTATACAGCTATAGCTG
genomic: TGTTAAAGATATTCCTGCAGCTTCGGGTCTCAAGATTTGTTTTATAATAGgtatggcatt ... atttctgcagTTGGAGGCTGGCTTGCTTCACTTTCTGTTGCAGGTTATACAGCTATAGCTG
tctttttttatatgcctataatgaataacagagaagcaatccttgatttctgcagTTGGAGGCTGGCTTGCTTCACTTTCTGTTGCAGGTTATACAGCTATAGCTGTAAGAAAAATCGTCAAGACAGAAATGATACCTGCTGAGCCCATGGAAAA
tttctgc CT-rich tract
tataatgaataaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgtgtatgcacctgcagtgatgcttctattcatcttttttcttttctttttttatatgcctataatgaataacagagaagcaatccttgatttctgcagTTGGAGGCTGGCTTGCTTCACTTTCTGTTGCAGGTTATACAGCTATAGCTGTAAGAAAAATCGTCAAGACAGAAATGATACCTGCTGAGCCCATGGAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- gtgtatg
- - - - -cacctgc
- - - - - - - - - tgatgct
- - - - - - - - - - - - - ctattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaataac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaagcaa