Sequence
atgc intronic sequence ATGC exonic sequence...aaatttattttgcttttgttgattgatgttgaatttggcatgcaagcagatttcaatttttttttttcattaatgagttgatgttctttgtgtcatacagTCGGGAGTTTACTCACCGTGTGAAGTCTGTCTCCATGGCAAAGTTCACTTCACAAGAAGTTGAAGCTCTTCAAAAAGGTGGCAATCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0056g00910.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA05G12780.2 (Glycine max), 3'ss of exon 2
aaatttattttgcttttgttgattgatgttgaatttggcatgcaagcagatttcaatttttttttttcattaatgagttga--tgttctttg--tgtcatacagTCGGGAGTTTACTCACCGTGTGAAGTCTGTCTCCATGGCAAAGTTCACTTCACAAGAAGTTGAAGCTCTTCAAAAAGGTGGCAATCAG
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-cacatacttggagaaggct---tggttatgattgtggtagtagttccatatttggtgatattgtacaattcttaaaatcacctgttttttacatgtcatgcagTCGTGAGTTTACTCATCGTGTGAAGTCTGTGTCAATGGCAAAGTTCACTTCACAAGAAGTTGATGCTCTTCAAAATGGAGGTAACCAG
upper sequence: Vv08s0056g00910.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA19G20750.1 (Glycine max), 3'ss of exon 1
aaatttattttgcttttgttgattgatgttgaatttggcatgcaag--cagatttcaatttttttttttcattaatgagttgatgttctttgtgtcatacagTCGGGAGTTTACTCACCGTGTGAAGTCTGTCTCCATGGCAAAGTTCACTTCACAAGAAGTTGAAGCTCTTCAAAAAGGTGGCAATCAG
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---------------------------gttgtgtttgtggtagtagttctatatttggtgatattgtgagattctcaaaatcacccattttatgtcatgcagtcgtgaatttactcatcgtgtgaagTCTGTGTCAATGGCAAAGTTCACTTCACAAGAAGTTGATGCTCTTCAAAATGGAGGTAACCAG
upper sequence: Vv08s0056g00910.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA03G00850.1 (Glycine max), 3'ss of exon 2
aaatttattttgcttttgttgatt---gatgttgaatttggcatgcaagcagatttcaatttttttttttcattaatgagttgatgttctttgtgtcatacagTCGGGAGTTTACTCACCGTGTGAAGTCTGTCTCCATGGCAAAGTTCACTTCACAAGAAGTTGAAGCTCTTCAAAAAGGTGGCAATCAG
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-agcttgtcaccactaaaccaatcctagtggcttgaagtagtggttatgtagttggcgataatgtacaatcctt--taaatagtttatctttctgtcatgcagTCGTGAGTTTACCCATCGTGTGAAGTCTGTATCTATGGCAATGTTCACGTCACAAGAAGTTGATGCTCTTCAAAATGGGGGTAACCAG
upper sequence: Vv08s0056g00910.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT1G08680.2 (Arabidopsis thaliana), 3'ss of exon 2
---aaatttattttgcttttgttgattgatgttgaatttggcatgcaagcagatttcaatttttttttttcattaatgagttgatgttctttgtgtcatacagTCGGGAGTTTACTCACCGTGTGAAGTCTGTCTCCATGGCAAAGTTCACTTCACAAGAAGTTGAAGCTCTTCAAAAAGGTGGCAATCAG
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agctaagttacactgccttgatgtagtgaatatgttcctaccttttctttttctcttagtttcagtttttcatggtttattttat---tttgatgacctgcagCCGCGAATTCACTCATCGTGTGAAATCTGTGTCAATGTCAAAGTTTACTTCTAAAGAAGTTGAAGTACTTCAAAATGGTGGTAATCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcagatttcaatttttttttttcattaatgagttgatgttctttgtgtcatacagTCGGGAGTTTACTCACCGTGTGAAGTCTGTCTCCATGGCAAAGTTCACTTCACAAGAAGTTGAAGCTCTTCAAAAAGGTGGCAATCAG
ttctttgt CT-rich tract
tttcaatttttttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaatttattttgcttttgttgattgatgttgaatttggcatgcaagcagatttcaatttttttttttcattaatgagttgatgttctttgtgtcatacagTCGGGAGTTTACTCACCGTGTGAAGTCTGTCTCCATGGCAAAGTTCACTTCACAAGAAGTTGAAGCTCTTCAAAAAGGTGGCAATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - -gcatgca