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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagccttttttttggttgtttgaaatactgttggttgatatggttagaagctttgttttaatatttttctttgttttatttgattgatattttgctacatcttagGGGCCTGTGCTTAAAGACCTCTGGGATGATGAACGAAGGAAGGAGCACCAACACTGGACGATATTATTTTCCCATTTGATTGCAGAATGGGCACAATGGT

Basic information

species Vitis vinifera
transcript Vv08s0056g00790.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349829973|gb|FQ420233.1|FQ420233
EST:     TAAATGAACCTTTACTAGGCAATTATGAATATGATGATAAAGATTCAGAG                         GGGCCTGTGCTTAAAGACCCCTGGGATGATGAACGAAGGAAGGAGCACCAA
genomic: TAAATGAACCTTTACTAGGCAATTATGAATATGATGATAAAGATTCAGAGgtgagccttt ... tacatcttagGGGCCTGTGCTTAAAGACCTCTGGGATGATGAACGAAGGAAGGAGCACCAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttgttttaatatttttctttgttttatttgattgatattttgctacatcttagGGGCCTGTGCTTAAAGACCTCTGGGATGATGAACGAAGGAAGGAGCACCAACACTGGACGATATTATTTTCCCATTTGATTGCAGAATGGGCACAATGGT
                                       ttttgct  CT-rich tract
     ttttaatatttttctt  TA-rich tract