1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aagtcatggcatgataatctccatttttcttaatgatgttttctctccttcaaagttagtcaatttgaggatatggttacggaaaaatgtttccttgcagTGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCAAGATGATCTGGTGAACTCCATGAAAGAAGCCACTGGCAAGGAACTTTTG
species | Vitis vinifera |
transcript | Vv08s0056g00620.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAAT TGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCAEST: gi|110698903|gb|EE076929.1|EE076929
genomic: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAATgtgagttttg ... ttccttgcagTGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
EST: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAAT TGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCAEST: gi|30133266|gb|CB918605.1|CB918605
genomic: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAATgtgagttttg ... ttccttgcagTGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
EST: ATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAAT TGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCAEST: gi|110723106|gb|EE100040.1|EE100040
genomic: ATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAATgtgagttttg ... ttccttgcagTGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
EST: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAAT TGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCAEST: gi|351023437|gb|FQ432820.1|FQ432820
genomic: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAATgtgagttttg ... ttccttgcagTGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
EST: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAAT TGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCAEST: gi|294963783|gb|GW836633.1|GW836633
genomic: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAATgtgagttttg ... ttccttgcagTGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
EST: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAAT TGAGTACTCAATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCAEST: gi|110378220|gb|EC943340.1|EC943340
genomic: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAATgtgagttttg ... ttccttgcagTGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
EST: GCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAAT TGAGTACTCAATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCAEST: gi|351013904|gb|FQ434056.1|FQ434056
genomic: GCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAATgtgagttttg ... ttccttgcagTGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
EST: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAAT TGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCAEST: gi|110376043|gb|EC941082.1|EC941082
genomic: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAATgtgagttttg ... ttccttgcagTGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
EST: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAAT TGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCAEST: gi|110411460|gb|EC977174.1|EC977174
genomic: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAATgtgagttttg ... ttccttgcagTGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
EST: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAAT TGAGTACTCAATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCAEST: gi|110702891|gb|EE079258.1|EE079258
genomic: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAATgtgagttttg ... ttccttgcagTGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
EST: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAAT TGAGTACTCAATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCAEST: gi|351017341|gb|FQ435693.1|FQ435693
genomic: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAATgtgagttttg ... ttccttgcagTGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
EST: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAAT TGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCAEST: gi|294966352|gb|GW837603.1|GW837603
genomic: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAATgtgagttttg ... ttccttgcagTGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
EST: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAAT TGAGTACTCAATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCAEST: gi|349819240|gb|FQ412134.1|FQ412134
genomic: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAATgtgagttttg ... ttccttgcagTGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
EST: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAAT TGAGTACTCAATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCAEST: gi|110702889|gb|EE079256.1|EE079256
genomic: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAATgtgagttttg ... ttccttgcagTGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
EST: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAAT TGAGTACTCAATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCAEST: gi|161718482|gb|FC066332.1|FC066332
genomic: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAATgtgagttttg ... ttccttgcagTGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
EST: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAAT TGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCAEST: gi|110687935|gb|EE065911.1|EE065911
genomic: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAATgtgagttttg ... ttccttgcagTGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
EST: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAAT TGAGTACTCAATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCAEST: gi|77587268|gb|DV222769.1|DV222769
genomic: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAATgtgagttttg ... ttccttgcagTGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
EST: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAAT TGAGTACTCAATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCAEST: gi|110702890|gb|EE079257.1|EE079257
genomic: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAATgtgagttttg ... ttccttgcagTGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
EST: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAAT TGAGTACTCAATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCAEST: gi|110362618|gb|EC926164.1|EC926164
genomic: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAATgtgagttttg ... ttccttgcagTGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
EST: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAAT TGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCAEST: gi|71859327|gb|DT008382.1|DT008382
genomic: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAATgtgagttttg ... ttccttgcagTGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
EST: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAAT TGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCAEST: gi|351015182|gb|FQ445466.1|FQ445466
genomic: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAATgtgagttttg ... ttccttgcagTGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
EST: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAAT TGAGTACTCAATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
genomic: AGACAAGAATATGAGCGGAAGGCAAAGCAGGTGGAAATTCGAAGGAAAATgtgagttttg ... ttccttgcagTGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCA
tccttcaaagttagtcaatttgaggatatggttacggaaaaatgtttccttgcagTGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCAAGATGATCTGGTGAACTCCATGAAAGAAGCCACTGGCAAGGAACTTTTG
tgtttcctt CT-rich tract
aaaaatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagtcatggcatgataatctccatttttcttaatgatgttttctctccttcaaagttagtcaatttgaggatatggttacggaaaaatgtttccttgcagTGAGTACTCGATGCAGCTGAATGCATCCCGCATCAAGGTTCTTCAAGCGCAAGATGATCTGGTGAACTCCATGAAAGAAGCCACTGGCAAGGAACTTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- -tcatggc
- - - - - - - - atctcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaaaaa