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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgttctgtttttcagttttatgcatccaattcattatgaacctttgcttattaaagcttccagaagcacttgcactgatcactctatttatttcctttatattgttcttgattatttactgcagATGTGTTTTTTGCCGCAAACGGGCTGATTTGCTTGCCTCTCAGAAG

Basic information

species Vitis vinifera
transcript Vv08s0040g03130.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|294964649|gb|GW838452.1|GW838452
EST:     GATTTGTGGAAAGATAGAAAAGCTGTGGTGGCATTTGCTCGCCATTTTGG                         ATGTGTATTTTGCCGCAAACGGGCTGATTTACTTGCCTCTCAGAAG
genomic: GATTTGTGGAAAGATAGAAAAGCTGTGGTGGCATTTGCTCGCCATTTTGGgtgtgttctg ... tttactgcagATGTGTTTTTTGCCGCAAACGGGCTGATTTGCTTGCCTCTCAGAAG
EST: gi|26263854|gb|CA814917.1|CA814917
EST:     GATTTGTGGAAAGATAGAAAAGCTGTGGTGGCATTTGCTCGCCATTTTGG                         ATGTGTTTTTTGCCGCAAACGGGCTGATTTACTTGCCTCTCAGAAG
genomic: GATTTGTGGAAAGATAGAAAAGCTGTGGTGGCATTTGCTCGCCATTTTGGgtgtgttctg ... tttactgcagATGTGTTTTTTGCCGCAAACGGGCTGATTTGCTTGCCTCTCAGAAG
EST: gi|110374235|gb|EC938881.1|EC938881
EST:     GATTTGTGGAAAGATAGAAAAGCTGTGGTGGCATTTGCTCGCCATTTTGG                         ATGTGTTTTTTGCCGCAAACGGGCTGATTTACTTGCCTCTCAGAAG
genomic: GATTTGTGGAAAGATAGAAAAGCTGTGGTGGCATTTGCTCGCCATTTTGGgtgtgttctg ... tttactgcagATGTGTTTTTTGCCGCAAACGGGCTGATTTGCTTGCCTCTCAGAAG
EST: gi|110731056|gb|EE108844.1|EE108844
EST:     GATTTGTGGAAAGATAGAAAAGCTGTGGTGGCATTTGCTCGCCATTTTGG                         ATGTGTTTTTTGCCGCAAACGGGCTGATTTACTTGCCTCTCAGAAG
genomic: GATTTGTGGAAAGATAGAAAAGCTGTGGTGGCATTTGCTCGCCATTTTGGgtgtgttctg ... tttactgcagATGTGTTTTTTGCCGCAAACGGGCTGATTTGCTTGCCTCTCAGAAG
EST: gi|351021722|gb|FQ437107.1|FQ437107
EST:     GATTTGTGGAAAGATAGAAAGGCTGTGGTGGCATTTGCTCGCCATTTTGG                         ATGTGTTTTTTGCCGCAAACGGGCTGATTTACTTGCCTCTCAGAAG
genomic: GATTTGTGGAAAGATAGAAAAGCTGTGGTGGCATTTGCTCGCCATTTTGGgtgtgttctg ... tttactgcagATGTGTTTTTTGCCGCAAACGGGCTGATTTGCTTGCCTCTCAGAAG
EST: gi|110360893|gb|EC924336.1|EC924336
EST:     GATTTGTGGAAAGATAGAAAAGCTGTGGTGGCATTTGCTCGCCATTTTGG                         ATGTGTTTTTTGCCGCAAACGGGCTGATTTACTTGCCTCTCAGAAG
genomic: GATTTGTGGAAAGATAGAAAAGCTGTGGTGGCATTTGCTCGCCATTTTGGgtgtgttctg ... tttactgcagATGTGTTTTTTGCCGCAAACGGGCTGATTTGCTTGCCTCTCAGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgcactgatcactctatttatttcctttatattgttcttgattatttactgcagATGTGTTTTTTGCCGCAAACGGGCTGATTTGCTTGCCTCTCAGAAG
               tatttatttcctttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgtgttctgtttttcagttttatgcatccaattcattatgaacctttgcttattaaagcttccagaagcacttgcactgatcactctatttatttcctttatattgttcttgattatttactgcagATGTGTTTTTTGCCGCAAACGGGCTGATTTGCTTGCCTCTCAGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT