Sequence
atgc intronic sequence ATGC exonic sequence...ttgagcagtgccacacacattgatgagggatggttcccaaaccattatctatggatcacctcatgtatatagagcttcttatctttctttgtctttgcagGTTTCAAGATCCATAGGTGACGCATATCTTAAGAAGGCAGAGTTCAACAGAGAGCCTCTCCTGTCCAGGTTTAGATTGCCTCAACCCTTCATCGAGCCTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0040g02970.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA19G36040.1 (Glycine max), 3'ss of exon 3
--ttgagcagt-gccacacacattgatgagggatggttcccaaaccattatctatggatcacctcatgtatatagagcttcttatctttctttgtctttgcagGTTTCAAGATCCATAGGTGACGCATATCTTAAGAAGGCAGAGTTCAACAGAGAGCCTCTCCTGTCCAGGTTTAGATTGCCTCAACCCTTCATCGAGCCTA
||| || || |||||| |||| | || | | || | || | | | | ||| || || |||||||||||||||||||||||||||| |||||||| ||||| | || |||||||| |||||||| | | || ||||||| | | | |||||| |||| |
gcatgattggttatgactgacattgttgagaa---ggctataagctactactacaacaacaaaaatcatgtcaattccaagttaactgatttatcctttgcagGTTTCAAGATCCATAGGTGATGCATATCTGAAGAAAGACGAATTCAACAGGGAGCCTCTACCGAACAAGTTTAGACTATCAGAGCCCTTCTCTAAGCCAA
upper sequence: Vv08s0040g02970.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA03G33320.1 (Glycine max), 3'ss of exon 3
ttgagcagtgccacacacattgatgagggatggttcccaaaccattatctatggatcacctcatgtatatagagctt-cttatctttc-tttgtc-tttgcagGTTTCAAGATCCATAGGTGACGCATATCTTAAGAAGGCAGAGTTCAACAGAGAGCCTCTCCTGTCCAGGTTTAGATTGCCTCAACCCTTCATCGAGCCTA
||| || ||| | || || | | | | || | | | | | | | || || | | || | || ||| || ||||||||||||||||||||||||||| |||||||| ||||| | || || || || |||||||| | | || ||||||| | ||| |||||||| || |||| |
-tgacttatgattgacattgttgagaaggctataagctacaacaacaacaacaaa--atcgtgttgattccaagttaacagatttatcatttatcctttgcagGTTTCAAGATCCATAGGTGATGCATATCTGAAGAAAGACGAATTTAATAGGGAGCCTCTACCGAACAAGTTTAGACTACCTGAACCCTTCTTCAAGCCAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161714432|gb|FC063858.1|FC063858EST: ATATTGTGGTCTTAAGACACAAGGTTTGGCGTGTGAAGGGACTCATACAG GTTTCAAGATCCATAGGTGACGCATATCTTAAGAAGGCAG
genomic: ATATTGTGGTCTTAAGACACAAGGTTTGGCGTGTGAAGGGACTCATACAGgtaatttctt ... gtctttgcagGTTTCAAGATCCATAGGTGACGCATATCTTAAGAAGGCAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatctatggatcacctcatgtatatagagcttcttatctttctttgtctttgcagGTTTCAAGATCCATAGGTGACGCATATCTTAAGAAGGCAGAGTTCAACAGAGAGCCTCTCCTGTCCAGGTTTAGATTGCCTCAACCCTTCATCGAGCCTA
cttcttatctttcttt CT-rich tract
atgtatata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttgagcagtgccacacacattgatgagggatggttcccaaaccattatctatggatcacctcatgtatatagagcttcttatctttctttgtctttgcagGTTTCAAGATCCATAGGTGACGCATATCTTAAGAAGGCAGAGTTCAACAGAGAGCCTCTCCTGTCCAGGTTTAGATTGCCTCAACCCTTCATCGAGCCTA
- - - - - ccacaca
- - - - - - - - - - - - - gggatgg
- - - - - - - - - - - - - - - - - - -caaacca
- - - - - - - - - - - - - - - - - - - - - - - - ctatgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - cacctca