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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacctacttttgttgtaacgcatgttgagttaattcttaatgtctcctttttactagtggccttttattatgacattttttatttcaatgcagGACCTGGAGCTCCAACAATTTTCAACTGT

Basic information

species Vitis vinifera
transcript Vv08s0040g02470.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71889504|gb|DT038559.1|DT038559
EST:     CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAG                         GACCTGGAGCTCCAACAATTTTCAACTGT
genomic: CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAGgtacctactt ... ttcaatgcagGACCTGGAGCTCCAACAATTTTCAACTGT
EST: gi|110364488|gb|EC924298.1|EC924298
EST:     CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAG                         GACCTGGAGCTCCAACAATTTTCAACTGT
genomic: CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAGgtacctactt ... ttcaatgcagGACCTGGAGCTCCAACAATTTTCAACTGT
EST: gi|30128230|gb|CB913569.1|CB913569
EST:     CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAG                         GACCTGGAGCTCCAACAATTTTCAACTGT
genomic: CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAGgtacctactt ... ttcaatgcagGACCTGGAGCTCCAACAATTTTCAACTGT
EST: gi|18458986|gb|BM437264.1|BM437264
EST:     CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAG                         GACCTGGAGCTCCAACAATTTTCAACTGT
genomic: CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAGgtacctactt ... ttcaatgcagGACCTGGAGCTCCAACAATTTTCAACTGT
EST: gi|110375226|gb|EC940190.1|EC940190
EST:     CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAG                         GACCTGGAGCTCCAACAATTTTCAACTGT
genomic: CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAGgtacctactt ... ttcaatgcagGACCTGGAGCTCCAACAATTTTCAACTGT
EST: gi|30124847|gb|CB910186.1|CB910186
EST:     CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAG                         GACCTGGAGCTCCAACAATTTTCAACTGT
genomic: CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAGgtacctactt ... ttcaatgcagGACCTGGAGCTCCAACAATTTTCAACTGT
EST: gi|71885238|gb|DT034293.1|DT034293
EST:     CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAG                         GACCTGGAGCTCCAACAATTTTCAACTGT
genomic: CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAGgtacctactt ... ttcaatgcagGACCTGGAGCTCCAACAATTTTCAACTGT
EST: gi|32272447|gb|CD721606.1|CD721606
EST:     CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAG                         GACCTGGAGCTCCAACAATTTTCAACTGT
genomic: CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAGgtacctactt ... ttcaatgcagGACCTGGAGCTCCAACAATTTTCAACTGT
EST: gi|32248310|gb|CD714129.1|CD714129
EST:     CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAG                         GACCTGGAGCTCCAACAATTTTCAACTGT
genomic: CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAGgtacctactt ... ttcaatgcagGACCTGGAGCTCCAACAATTTTCAACTGT
EST: gi|71882429|gb|DT031484.1|DT031484
EST:     CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAG                         GACCTGGAGCTCCAACAATTTTCAACTGT
genomic: CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAGgtacctactt ... ttcaatgcagGACCTGGAGCTCCAACAATTTTCAACTGT
EST: gi|33406231|gb|CF211858.1|CF211858
EST:     CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAG                         GACCTGGAGCTCCAACAATTTTCAACTGT
genomic: CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAGgtacctactt ... ttcaatgcagGACCTGGAGCTCCAACAATTTTCAACTGT
EST: gi|110383531|gb|EC947909.1|EC947909
EST:     CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAG                         GACCTGGAGCTCCAACAATTTTCAACTGT
genomic: CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAGgtacctactt ... ttcaatgcagGACCTGGAGCTCCAACAATTTTCAACTGT
EST: gi|71883308|gb|DT032363.1|DT032363
EST:     CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAG                         GACCTGGAGCTCCAACAATTTTCAACTGT
genomic: CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAGgtacctactt ... ttcaatgcagGACCTGGAGCTCCAACAATTTTCAACTGT
EST: gi|110360555|gb|EC923759.1|EC923759
EST:     CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAG                         GACCTGGAGCTCCAACAATTTTCAACTGT
genomic: CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAGgtacctactt ... ttcaatgcagGACCTGGAGCTCCAACAATTTTCAACTGT
EST: gi|110708943|gb|EE083969.1|EE083969
EST:     CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAG                         GACCTGGAGCTCCAACAATTTTCAACTGT
genomic: CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAGgtacctactt ... ttcaatgcagGACCTGGAGCTCCAACAATTTTCAACTGT
EST: gi|110717369|gb|EE093164.1|EE093164
EST:     CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAG                         GACCTGGAGCTCCAACAATTTTCAACTGT
genomic: CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAGgtacctactt ... ttcaatgcagGACCTGGAGCTCCAACAATTTTCAACTGT
EST: gi|71881781|gb|DT030836.1|DT030836
EST:     CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAG                         GACCTGGAGCTCCAACAATTTTCAACTGT
genomic: CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAGgtacctactt ... ttcaatgcagGACCTGGAGCTCCAACAATTTTCAACTGT
EST: gi|110701996|gb|EE080208.1|EE080208
EST:     CATGACCCGGAAGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAG                         GACCTGGAGCTCCAACAATTTTCAACTGT
genomic: CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAGgtacctactt ... ttcaatgcagGACCTGGAGCTCCAACAATTTTCAACTGT
EST: gi|32271061|gb|CD720220.1|CD720220
EST:     CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAG                         GACCTGGAGCTCCAACAATTTTCAACTGT
genomic: CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAGgtacctactt ... ttcaatgcagGACCTGGAGCTCCAACAATTTTCAACTGT
EST: gi|110717373|gb|EE093175.1|EE093175
EST:     CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAG                         GACCTGGAGCTCCAACAATTTTCAACTGT
genomic: CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAGgtacctactt ... ttcaatgcagGACCTGGAGCTCCAACAATTTTCAACTGT
EST: gi|27584534|gb|CB007229.1|CB007229
EST:     CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAG                         GACCTGGAGCTCCAACAATTTTCAACTGT
genomic: CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAGgtacctactt ... ttcaatgcagGACCTGGAGCTCCAACAATTTTCAACTGT
EST: gi|110731173|gb|EE109089.1|EE109089
EST:     CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAG                         GACCTGGAGCTCCAACAATTTTCAACTGT
genomic: CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAGgtacctactt ... ttcaatgcagGACCTGGAGCTCCAACAATTTTCAACTGT
EST: gi|32272325|gb|CD721484.1|CD721484
EST:     CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAG                         GACCTGGAGCTCCAACAATTTTCAACTGT
genomic: CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAGgtacctactt ... ttcaatgcagGACCTGGAGCTCCAACAATTTTCAACTGT
EST: gi|71888705|gb|DT037760.1|DT037760
EST:     CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAG                         GACCTGGAGCTCCAACAATTTTCAACTGT
genomic: CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAGgtacctactt ... ttcaatgcagGACCTGGAGCTCCAACAATTTTCAACTGT
EST: gi|110686108|gb|EE063413.1|EE063413
EST:     CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAG                         GACCTGGAGCTCCAACAATTTTCAACTGT
genomic: CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAGgtacctactt ... ttcaatgcagGACCTGGAGCTCCAACAATTTTCAACTGT
EST: gi|110725753|gb|EE102618.1|EE102618
EST:     CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAG                         GACCTGGAGCTCCAACAATTTTCAACTGT
genomic: CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAGgtacctactt ... ttcaatgcagGACCTGGAGCTCCAACAATTTTCAACTGT
EST: gi|110688777|gb|EE067713.1|EE067713
EST:     CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAG                         GACCTGGAGCTCCAACAATTTTCAACTGT
genomic: CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAGgtacctactt ... ttcaatgcagGACCTGGAGCTCCAACAATTTTCAACTGT
EST: gi|30129868|gb|CB915207.1|CB915207
EST:     CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAG                         GACCTGGAGCTCCAACAATTTTCAACTGT
genomic: CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAGgtacctactt ... ttcaatgcagGACCTGGAGCTCCAACAATTTTCAACTGT
EST: gi|27583109|gb|CB005804.1|CB005804
EST:     CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAG                         GACCTGGAGCTCCAACAATTTTCAACTGT
genomic: CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAGgtacctactt ... ttcaatgcagGACCTGGAGCTCCAACAATTTTCAACTGT
EST: gi|351025513|gb|FQ435206.1|FQ435206
EST:     CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGC---ATCTTGAGATAG                         GACCTGGAGCTCCAACAATTTTCAACTGT
genomic: CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAGgtacctactt ... ttcaatgcagGACCTGGAGCTCCAACAATTTTCAACTGT
EST: gi|110717897|gb|EE094154.1|EE094154
EST:     ATCTTGAGATAG                         GACCTGGAGCTCCAACAATTTTCAACTGT
genomic: ATCTTGAGATAGgtacctactt ... ttcaatgcagGACCTGGAGCTCCAACAATTTTCAACTGT
EST: gi|32249271|gb|CD715090.1|CD715090
EST:     CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAG                         GACCTGGAGCTCCAACAATTTTCAACTGT
genomic: CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAGgtacctactt ... ttcaatgcagGACCTGGAGCTCCAACAATTTTCAACTGT
EST: gi|110730667|gb|EE108007.1|EE108007
EST:     CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAG                         GACCTGGAGCTCCAACAATTTTCAACTGT
genomic: CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAGgtacctactt ... ttcaatgcagGACCTGGAGCTCCAACAATTTTCAACTGT
EST: gi|110703181|gb|EE079800.1|EE079800
EST:     CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAG                         GACCTGGAGCTCCAACAATTTTCAACTGT
genomic: CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAGgtacctactt ... ttcaatgcagGACCTGGAGCTCCAACAATTTTCAACTGT
EST: gi|32249038|gb|CD714857.1|CD714857
EST:     CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAG                         GACCTGGAGCTCCAACAATTTTCAACTGT
genomic: CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAGgtacctactt ... ttcaatgcagGACCTGGAGCTCCAACAATTTTCAACTGT
EST: gi|110727272|gb|EE103839.1|EE103839
EST:     CTGCACACCCCTGGCATGATCTTGAGATAG                         GACCTGGAGCTCCAACAATTTTCAACTGT
genomic: CTGCACACCCCTGGCATGATCTTGAGATAGgtacctactt ... ttcaatgcagGACCTGGAGCTCCAACAATTTTCAACTGT
EST: gi|33406869|gb|CF212496.1|CF212496
EST:     CCCTGGCATGATCTTGAGATAG                         GACCTGGAGCTCCAACAATTTTCAACTGT
genomic: CCCTGGCATGATCTTGAGATAGgtacctactt ... ttcaatgcagGACCTGGAGCTCCAACAATTTTCAACTGT
EST: gi|110700548|gb|EE078712.1|EE078712
EST:     CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAG                         GACCTGGAGCTCCAACAATTTTCAACTGT
genomic: CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAGgtacctactt ... ttcaatgcagGACCTGGAGCTCCAACAATTTTCAACTGT
EST: gi|110690416|gb|EE067494.1|EE067494
EST:     CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAG                         GACCTGGAGCTCCAACAATTTTCAACTGT
genomic: CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAGgtacctactt ... ttcaatgcagGACCTGGAGCTCCAACAATTTTCAACTGT
EST: gi|71888253|gb|DT037308.1|DT037308
EST:     CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAG                         GACCTGGAGCTCCAACAATTTTCAACTGT
genomic: CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAGgtacctactt ... ttcaatgcagGACCTGGAGCTCCAACAATTTTCAACTGT
EST: gi|32271206|gb|CD720365.1|CD720365
EST:     CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAG                         GACCTGGAGCTCCAACAATTTTCAACTGT
genomic: CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAGgtacctactt ... ttcaatgcagGACCTGGAGCTCCAACAATTTTCAACTGT
EST: gi|110723089|gb|EE099999.1|EE099999
EST:     CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAG                         GACCTGGAGCTCCAACAATTTTCAACTGT
genomic: CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAGgtacctactt ... ttcaatgcagGACCTGGAGCTCCAACAATTTTCAACTGT
EST: gi|110397892|gb|EC963867.1|EC963867
EST:     CCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAG                         GACCGGGAGCTCCAACAATTTTCAACTGT
genomic: CCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAGgtacctactt ... ttcaatgcagGACCTGGAGCTCCAACAATTTTCAACTGT
EST: gi|351012488|gb|FQ427089.1|FQ427089
EST:     CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAG                         GACCTGGAGCTCCAACAATTTTCAACTGT
genomic: CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAGgtacctactt ... ttcaatgcagGACCTGGAGCTCCAACAATTTTCAACTGT
EST: gi|110374151|gb|EC938723.1|EC938723
EST:     CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAG                         GACCTGGAGCTCCAACAATTTTCAACTGT
genomic: CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAGgtacctactt ... ttcaatgcagGACCTGGAGCTCCAACAATTTTCAACTGT
EST: gi|32267585|gb|CD716548.1|CD716548
EST:     CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAG                         GACCTGGAGCTCCAACAATTTTCAACTGT
genomic: CATGACCCGGAGGGCTGTTGCTGCACACCCCTGGCATGATCTTGAGATAGgtacctactt ... ttcaatgcagGACCTGGAGCTCCAACAATTTTCAACTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgtctcctttttactagtggccttttattatgacattttttatttcaatgcagGACCTGGAGCTCCAACAATTTTCAACTGT
 tcttaat  putative branch site (score: 3)
                                     ttttttatttc  putative PPT
                        ttttattatgacattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacctacttttgttgtaacgcatgttgagttaattcttaatgtctcctttttactagtggccttttattatgacattttttatttcaatgcagGACCTGGAGCTCCAACAATTTTCAACTGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT