Sequence
atgc intronic sequence ATGC exonic sequencegtttggaggaattccaatgtgattgtttttgttatttgaagtttttgtaattttaaatggtttttaagtgtatttttttatgactctttttcagAGAGCAGATAAATCCAAGAAGAAATGGTTTGGGAAGCACAAATATCCAGATCCTAATCCTTCCTCTTTAGAAACTGTTCCAGGGCCTTCTCTTGCTCCTC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0040g02360.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA19G36270.2 (Glycine max), 3'ss of exon 2
gtttggaggaattccaatgtgattgtttttg------ttatttgaagtttttgtaattttaaatggtttttaagtgtatttttttatgactc--tttttcagAGAGCAGATAAATCCAAGAAGAAATGGTTTGGGAAGCACAAATATCCAGATCCTAATCCTTCCTCTTTAGAAACTGTTCCAGGGCCTTCTCTTGCTCCTC---
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gtttgggtgaaatttaattcaacttatcctgattaatttaattcaacttatcccaattttctg-ggttttttctttaagagttttatcatttgtttctgcagAAATCAAGTAAATCTAAGAAGAAATGGTTTGGGAAGCAAAAAT-TTGAGACTTCAGTC--TCATACTCAGAAGCTGATAAAGCACCACCACCACCACCTCCTA
upper sequence: Vv08s0040g02360.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA03G33560.1 (Glycine max), 3'ss of exon 2
gtttggaggaattccaatgtgattgtttttgttatttgaagtttttgtaattttaaatggtttttaagtgtatttttttatgactctttttcagAGAGCAGATAAATCCAAGAAGAAATGGTTTGGGAAGCACAAATATCCAGATCCTAATCCTTCCTCTTTAGAAACTGTTCCAGGGCCTTCTCTTGCTCCTC---
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----------------gtttgggtgaaatt--taattcaacttatctcaattttctg-ggttgtttcttatagttttatcaattatttttgcagAAATCAAGTAAATCTAAGAAGAAATGGTTTGGGAAGCAAAAAT-TGGAGACTTCAGTC--TCATACTCAGAAGCTCATAAAGCACCACCACCACCGCGACCTAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110394178|gb|EC958785.1|EC958785EST: CTTCCGTAAAGAAGGCTCTCAGCCCAGAACCCAAGGAGAAGAAGGACCAG AGAGCAGATAAATCCAAGAAGAAATGGTTTGGGAAGCACAAATATCCAGAT
genomic: CTTCCGTAAAGAAGGCTCTCAGCCCAGAACCCAAGGAGAAGAAGGACCAGgtttggagga ... tctttttcagAGAGCAGATAAATCCAAGAAGAAATGGTTTGGGAAGCACAAATATCCAGAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agtttttgtaattttaaatggtttttaagtgtatttttttatgactctttttcagAGAGCAGATAAATCCAAGAAGAAATGGTTTGGGAAGCACAAATATCCAGATCCTAATCCTTCCTCTTTAGAAACTGTTCCAGGGCCTTCTCTTGCTCCTC
ctctttttc CT-rich tract
ttgtaattttaaatgg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttggaggaattccaatgtgattgtttttgttatttgaagtttttgtaattttaaatggtttttaagtgtatttttttatgactctttttcagAGAGCAGATAAATCCAAGAAGAAATGGTTTGGGAAGCACAAATATCCAGATCCTAATCCTTCCTCTTTAGAAACTGTTCCAGGGCCTTCTCTTGCTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC