1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gttagttatttatatactttctaaatgtcatatttctcattatctctaagagttgtgtattgcaaattgcagACACCAGTGGTTTAAGTCATGAAACAAATCACTTCCCTTTAGGTAGCTGTACTACTAATGCTCCTGTGGAGTTTGGGGGATACAATCATGATTTCATTCC
species | Vitis vinifera |
transcript | Vv08s0040g02160.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGAGTGGAACCATATCTTGTCTCCTGCACATGGAAGAACTCCAGTTTCGG ACACCAGTGGTTTAAGTCATGAAACAAATCACTTCCCTTTAGGTAGCTGTAEST: gi|71890758|gb|DT039813.1|DT039813
genomic: GGAGTGGAACCATATCTTGTCTCCTGCACATGGAAGAACTCCAGTTTCGGgttagttatt ... caaattgcagACACCAGTGGTTTAAGTCATGAAACAAATCACTTCCCTTTAGGTAGCTGTA
EST: GGAGTGGAACCATATCTTGTCTCCTGCACATGGAAGAACTCCAGTTTCGG ACACCAGTGGTTTAAGTCATGAAACAAATCACTTCCCTTTAGGTAGCTGTAEST: gi|349811119|gb|FQ406131.1|FQ406131
genomic: GGAGTGGAACCATATCTTGTCTCCTGCACATGGAAGAACTCCAGTTTCGGgttagttatt ... caaattgcagACACCAGTGGTTTAAGTCATGAAACAAATCACTTCCCTTTAGGTAGCTGTA
EST: GGAGTGGAACCATATCTTGTCTCCTGCACATGGAAGAACTCCAGTTTCGG ACACCAGTGGTTTAAGTCATGAAACAAATCACTTCCCTTTAGGTAGCTGTAEST: gi|110357206|gb|EC920580.1|EC920580
genomic: GGAGTGGAACCATATCTTGTCTCCTGCACATGGAAGAACTCCAGTTTCGGgttagttatt ... caaattgcagACACCAGTGGTTTAAGTCATGAAACAAATCACTTCCCTTTAGGTAGCTGTA
EST: GGAGTGGAACCATATCTTGTCTCCTGCACATGGAAGAACTCCAGTTTCGG ACACCAGTGGTTTTAAGTCATGAAACAAATCACTTCCCCTTTAGGTAGCTGEST: gi|110359144|gb|EC920158.1|EC920158
genomic: GGAGTGGAACCATATCTTGTCTCCTGCACATGGAAGAACTCCAGTTTCGGgttagttatt ... caaattgcagACACCAGTGGTTT-AAGTCATGAAACAAATCACTTCCC-TTTAGGTAGCTG
EST: GGAGTGGAACCATATCTTGTCTCCTGCACATGGAAGAACTCCAGTTTCGG ACACCAGTGGTTTAAGTCATGAAACAAATCACTTCCCTTTAGGTAGCTGTAEST: gi|349819238|gb|FQ412132.1|FQ412132
genomic: GGAGTGGAACCATATCTTGTCTCCTGCACATGGAAGAACTCCAGTTTCGGgttagttatt ... caaattgcagACACCAGTGGTTTAAGTCATGAAACAAATCACTTCCCTTTAGGTAGCTGTA
EST: GGAGTGGAACCATATCTTGTCTCCTGCACATGGAAGAACTCCAGTTTCGG ACACCAGTGGTTTAAGTCATGAAACAAATCACTTCCCTTTAGGTAGCTGTAEST: gi|110359202|gb|EC920316.1|EC920316
genomic: GGAGTGGAACCATATCTTGTCTCCTGCACATGGAAGAACTCCAGTTTCGGgttagttatt ... caaattgcagACACCAGTGGTTTAAGTCATGAAACAAATCACTTCCCTTTAGGTAGCTGTA
EST: GGAGTGGAACCATATCTTGTCTCCTGCACATGGAAGAACTCCAGTTTCGG ACACCAGTGGTTTAAGTCATGAAACAAATCACTTCCCTTTAGGTAGCTGTAEST: gi|349821118|gb|FQ408705.1|FQ408705
genomic: GGAGTGGAACCATATCTTGTCTCCTGCACATGGAAGAACTCCAGTTTCGGgttagttatt ... caaattgcagACACCAGTGGTTTAAGTCATGAAACAAATCACTTCCCTTTAGGTAGCTGTA
EST: GGAGTGGAACCATATCTTGTCTCCTGCACATGGAAGAACTCCAGTTTCGG ACACCAGTGGTTTAAGTCATGAAACAAATCACTTCCCTTTAGGTAGCTGTAEST: gi|161714446|gb|FC064439.1|FC064439
genomic: GGAGTGGAACCATATCTTGTCTCCTGCACATGGAAGAACTCCAGTTTCGGgttagttatt ... caaattgcagACACCAGTGGTTTAAGTCATGAAACAAATCACTTCCCTTTAGGTAGCTGTA
EST: GGAGTGGAACCATATCTTGTCTCCTGCACATGGAAGAACTCCAGTTTCGG ACACCAGTGGTTTAAGTCATGAAACAAATCACTTCCCTTTAGGTAGCTGTAEST: gi|349819477|gb|FQ413361.1|FQ413361
genomic: GGAGTGGAACCATATCTTGTCTCCTGCACATGGAAGAACTCCAGTTTCGGgttagttatt ... caaattgcagACACCAGTGGTTTAAGTCATGAAACAAATCACTTCCCTTTAGGTAGCTGTA
EST: GGAGTGGAACCATATCTTGTCTCCTGCACATGGAAGAACTCCAGTTTCGG ACACCAGTGGTTTAAGTCATGAAACAAATCACTTCCCTTTAGGTAGCTGTAEST: gi|77586284|gb|DV222241.1|DV222241
genomic: GGAGTGGAACCATATCTTGTCTCCTGCACATGGAAGAACTCCAGTTTCGGgttagttatt ... caaattgcagACACCAGTGGTTTAAGTCATGAAACAAATCACTTCCCTTTAGGTAGCTGTA
EST: GGAGTGGAACCATATCTTGTCTCCTGCACATGGAAGAACTCCAGTTTCGG ACACCAGTGGTTTAAGTCATGAAACAAATCACTTCCCTTTAGGTAGCTGTAEST: gi|110731672|gb|EE106288.1|EE106288
genomic: GGAGTGGAACCATATCTTGTCTCCTGCACATGGAAGAACTCCAGTTTCGGgttagttatt ... caaattgcagACACCAGTGGTTTAAGTCATGAAACAAATCACTTCCCTTTAGGTAGCTGTA
EST: GGAGTGGAACCATATCTTGTCTCCTGCACATGGAAGAACTCCAGTTTCGG ACACCAGTGGTTTAAGTCATGAAACAAATCACTTCCCTTTANGTAGCTGTA
genomic: GGAGTGGAACCATATCTTGTCTCCTGCACATGGAAGAACTCCAGTTTCGGgttagttatt ... caaattgcagACACCAGTGGTTTAAGTCATGAAACAAATCACTTCCCTTTAGGTAGCTGTA
tttctaaatgtcatatttctcattatctctaagagttgtgtattgcaaattgcagACACCAGTGGTTTAAGTCATGAAACAAATCACTTCCCTTTAGGTAGCTGTACTACTAATGCTCCTGTGGAGTTTGGGGGATACAATCATGATTTCATTCC
ttctaaa putative branch site (score: 2)
atatttctcattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagttatttatatactttctaaatgtcatatttctcattatctctaagagttgtgtattgcaaattgcagACACCAGTGGTTTAAGTCATGAAACAAATCACTTCCCTTTAGGTAGCTGTACTACTAATGCTCCTGTGGAGTTTGGGGGATACAATCATGATTTCATTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG