Sequence
atgc intronic sequence ATGC exonic sequence...cttatatcttgatgatgcttgatttatagccatttatgtttttctctacattctaactcttgtctatttcctgtggttatctggtgaccatacaatacagAGCAGTGGGGACTCAGGTGCTAACGTTAAGCGCCTTGAACAAGAGACACAGGCAAAGATTCATCACCTGAAAACAGAGGCTGGGAGAATATCACATGATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0040g01910.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA03G33790.1 (Glycine max), 3'ss of exon 3
-----------------------------------cttatatcttgatgatgcttgatt---tatagccatttatgtttttctctacattctaactcttgtctatttcctgtggttatctggtgac-catac-aatacagAGCAGTGGGGACTCAGGTGCTAACGTTAAGCGCCTTGAACAAGAGACACAGGCAAAGATTCATCACCTGAAAACAGAGGCTGGGAGAATATCACATGATG
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gcaagtctatgattgattacggtaaaaaaaaaaaattaatgtcgctgttgtaccaaaataaataaaatgcctcattttcgccgttggactaccactacatattattcttagtttgtatgcattcattcttatgagtacagAGTAGTGGAGATTCTGGTGCTAATGTGAAGAGACTTGAGCAAGAGACAGAAGAAAAGATTCATCACCTGAAAACTGAGGCTGAGAGGATATCAGGGGATGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110404650|gb|EC970042.1|EC970042EST: CTGCTTACCGAGCCCAGGTTGAACTTGAGTTCCAGAAGAAATTGGCTGAG AGCAGCGGGGACTCAGGTGCTAACGTTAAGCGCCTTGAACAAGAGACACAG
genomic: CTGCTTACCGAGCCCAGGTTGAACTTGAGTTCCAGAAGAAATTGGCTGAGgtaagtatag ... tacaatacagAGCAGTGGGGACTCAGGTGCTAACGTTAAGCGCCTTGAACAAGAGACACAG
EST:
gi|30131526|gb|CB916865.1|CB916865EST: CTGCTTACCGAGCCCAGGTTGAACTTGAGTTCCAGAAGAAATTGGCTGAG AGCAGTGGGGACTCAGGTGCTAACGTTAAGCGCCTTGAACAAGAGACACAG
genomic: CTGCTTACCGAGCCCAGGTTGAACTTGAGTTCCAGAAGAAATTGGCTGAGgtaagtatag ... tacaatacagAGCAGTGGGGACTCAGGTGCTAACGTTAAGCGCCTTGAACAAGAGACACAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctacattctaactcttgtctatttcctgtggttatctggtgaccatacaatacagAGCAGTGGGGACTCAGGTGCTAACGTTAAGCGCCTTGAACAAGAGACACAGGCAAAGATTCATCACCTGAAAACAGAGGCTGGGAGAATATCACATGATG
ttctaac putative branch site (score: 1)
atacaata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cttatatcttgatgatgcttgatttatagccatttatgtttttctctacattctaactcttgtctatttcctgtggttatctggtgaccatacaatacagAGCAGTGGGGACTCAGGTGCTAACGTTAAGCGCCTTGAACAAGAGACACAGGCAAAGATTCATCACCTGAAAACAGAGGCTGGGAGAATATCACATGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - -cttgatg
- - - - - - - -tgcttga
- - - - - - - - - - - - - - -ccattta
- - - - - - - - - - - - - - - - - - - - - -ctctaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggtgac