Sequence
atgc intronic sequence ATGC exonic sequence...aacacataaatgcaaaaaatccttgatatagcatctttatcttctgccgtgcatattatatggtttaccttttgtctgggacccttttttccttgtttagGATCCGAGAAAGGGAGGAGTCTGTCACTGTTTTATTATGCGGCACAAGTGGGTGTGGCAAATCTACTTTGTCCACATTGCTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0040g01610.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT5G60760.1 (Arabidopsis thaliana), 3'ss of exon 3
-aacacataaatgcaaaaaatccttgatatagcatctttatcttctgccgtgcatattatat-ggtttaccttttgtctggg-acccttttttccttgtttagGATCCGAGAAAGGGAGGAGTCTGTCACTGTTTTATTATGCGGCACAAGTGGGTGTGGCAAATCTACTTTGTCCACATTGCTG
| |||| | | || || || | | || | ||| | || || | | || || | ||| | ||| | || | || |||||||||||| | || ||||| |||||| || | ||||| || ||||| |||||||||||||| | ||| || | |||
cattacattagt-catgccatttatggct--gtaactagaatcaatgcatttgatcttctttcacttcacacatcatctaaacattcttatcattttctacagAATCCGAGAAAGGAAAGAATCTGTGACTGTTCTACTGTGCGGTACTAGTGGCTGTGGCAAATCTACACTCTCCGCACTTCTG
upper sequence: Vv08s0040g01610.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: PP1S7_501V6.1 (Physcomitrella patens), 3'ss of exon 2
-------------------------------------------------------------aacacataaatgcaaaaaatccttgatatagcatctttatcttctgccgtgc--atattata-tggtttaccttttgtctgggacccttttt--------------------tccttgtt----tagGATCCGAGAAAGGGAGGAGTCTGTCACTGTTTTATTATGCGGCACAAGTGGGTGTGGCAAATCTACTTTGTCCACATTGCTG
|| | | | || | || || | || | || || || | | | ||| || |||| | |||||| ||| ||| ||| || | || || || || | | |||||||||||| |||| || || ||||||||||||||||| || || ||| | ||| |||||
gtatgcgttttcacgcttagtccctacacgctcatttgataagataaattatataattagatctaccttagtcgaagtaggatttcatgtt-tatttataactaatgacacccgaaaattgtaatggtgttttttttgttggggggatgtttcaaaagggatgatggatttgatccctgatgtggcagTATTCGTGAGAAGAGATCTTCTGTCACTGTTCTATTGTGTGGAACAAGTGGGTGTGGCAAGTCGACATTGGCGACACTGCTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gccgtgcatattatatggtttaccttttgtctgggacccttttttccttgtttagGATCCGAGAAAGGGAGGAGTCTGTCACTGTTTTATTATGCGGCACAAGTGGGTGTGGCAAATCTACTTTGTCCACATTGCTG
cccttttttccttgtt CT-rich tract
atattatatggttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aacacataaatgcaaaaaatccttgatatagcatctttatcttctgccgtgcatattatatggtttaccttttgtctgggacccttttttccttgtttagGATCCGAGAAAGGGAGGAGTCTGTCACTGTTTTATTATGCGGCACAAGTGGGTGTGGCAAATCTACTTTGTCCACATTGCTG
- -acataaa
- - - - - - -aaaaaat
- - - - - - - - - - - - - - - - - - - - - tctgccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctttt