1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gctatatttgcagctaatgatttccatagttttggaagtttttctcttttaatgactttgggattctgaggctctctcctttctaaccttggatatgcagTGGGGGAATTGGCATTTTTGATTGTGGGACTATGAAGTGTTTCACATTCTACTATGGTGACAAGAAGGAGGAACCAAAGACCTCAAAGTGGACATCTGTT
species | Vitis vinifera |
transcript | Vv08s0040g01570.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CATACGCTGGGGTTTTGGAGAGTTTCTGCAATTGGGTTGACGAGATTAAG TGGGGGAATTGGCATTTTTGATTGTGGGACTATGAAGTGTTTCACATTCTAEST: gi|71856677|gb|DT005732.1|DT005732
genomic: CATACGCTGGGGTTTTGGAGAGTTTCTGCAATTGGGTTGACGAGATTAAGgtgagttttg ... ggatatgcagTGGGGGAATTGGCATTTTTGATTGTGGGACTATGAAGTGTTTCACATTCTA
EST: CATACGCTGGGGTTTTGGAGAGTTTCTGCAATTGGGTTGACGAGATTAAG TGGGGGAATTGGCATTTTTGATTGTGGGACTATGAAGTGTTTCACATTCTAEST: gi|161713146|gb|FC062492.1|FC062492
genomic: CATACGCTGGGGTTTTGGAGAGTTTCTGCAATTGGGTTGACGAGATTAAGgtgagttttg ... ggatatgcagTGGGGGAATTGGCATTTTTGATTGTGGGACTATGAAGTGTTTCACATTCTA
EST: ATACGCTGGGGTTTTGGAGAGTTTCTGCAATTGGGTTGACGAGATTAAG TGGGGGAATTGGCATTTTTGATTGTGGGACTATGAAGTGTTTCACATTCTA
genomic: ATACGCTGGGGTTTTGGAGAGTTTCTGCAATTGGGTTGACGAGATTAAGgtgagttttg ... ggatatgcagTGGGGGAATTGGCATTTTTGATTGTGGGACTATGAAGTGTTTCACATTCTA
cttttaatgactttgggattctgaggctctctcctttctaaccttggatatgcagTGGGGGAATTGGCATTTTTGATTGTGGGACTATGAAGTGTTTCACATTCTACTATGGTGACAAGAAGGAGGAACCAAAGACCTCAAAGTGGACATCTGTT
ttctaac putative branch site (score: 1)
tttctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctatatttgcagctaatgatttccatagttttggaagtttttctcttttaatgactttgggattctgaggctctctcctttctaaccttggatatgcagTGGGGGAATTGGCATTTTTGATTGTGGGACTATGAAGTGTTTCACATTCTACTATGGTGACAAGAAGGAGGAACCAAAGACCTCAAAGTGGACATCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - gctaatg