Sequence
atgc intronic sequence ATGC exonic sequence...actataatgctaattaatgtgctcaaaaaaattactgcttagctcctttttgttacctattggcaatgaggagctatggtgaaattcttttttgatgcagCTATACTGTTTTGAGGATCGGGGAAATCGCCGTGTTGCATTAAGGCCTGAGCTCACTCCTTCTTTGGCAAGACTTGTGATACAGAAAGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0040g01360.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA03G34050.1 (Glycine max), 3'ss of exon 2
-actataatgctaattaatgtgctcaaaaaaattactgcttagctcctttttgttacctattggca-atgaggagctatggtgaaattcttttttgatgcagCTATACTGTTTTGAGGATCGGGGAAATCGCCGTGTTGCATTAAGGCCTGAGCTCACTCCTTCTTTGGCAAGACTTGTGATACAGAAAGG
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gaaaagaaattttattaaaaaag-cagataatgcatagccaaatacattattgaattttgataaaatataaaatattgaaat-atatacatttcaattgcagCTTTATTGTTTTGAAGATCGAGGCAATCGCCGTGTTGCATTGAGGCCTGAACTTACTCCTTCTTTGGCAAGGCTGGTGATCCAGAAAGG
upper sequence: Vv08s0040g01360.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT5G03406.1 (Arabidopsis thaliana), 3'ss of exon 2
---------actataatgctaattaatgtgctcaaaaaaattac-tgcttagctccttt--ttgttacctattggcaatgaggag-------------ctatggtgaaattctt------ttttgatgcagCTATACTGTTTTGAGGATCGGGGAAATCGCCGTGTTGCATTAAGGCCTGAGCTCACTCCTTCTTTGGCAAGACTTGTGATACAGAAAGG
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gtttgtctttctacgtttcgatttcattcgttttacttagcttcattcttaggatctttacttgcagtttaggtagaatttggggaagaatttagttccttagcttaaactcttgcaaccttgttgtgtagCTTTACTGCTTTGAAGATAGGGGTAATCGCCGTGTAGCATTGAGGCCTGAGCTTACACCTTCTTTAGCGAGGCTTGTCATACAGAAAGG
upper sequence: Vv08s0040g01360.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT3G46100.1 (Arabidopsis thaliana), 3'ss of exon 2
actataatgctaattaatgtgctcaaaaaaattactgcttagctcctttttgt-tacctattggcaatgaggagctatggtgaaattcttttttgatgcagCTATACTGTTTTGAGGATCGGGGAAATCGCCGTGTTGCATTAAGGCCTGAGCTCACTCCTTCTTTGGCAAGACTTGTGATACAGAAAGG
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--gttagtctttctctacat-ttcgaggatctttatctgcagttttatgtagaattgttagaagtatttagttccttagcttgcaaccttgtt--atgtagCTTTACTGCTTTGAAGATAGAGGAAATCGGCGTGTAGCATTGAGGCCTGAGCTTACACCTTCTTTAGCCAGGCTTGTCATACAGAAAGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctttttgttacctattggcaatgaggagctatggtgaaattcttttttgatgcagCTATACTGTTTTGAGGATCGGGGAAATCGCCGTGTTGCATTAAGGCCTGAGCTCACTCCTTCTTTGGCAAGACTTGTGATACAGAAAGG
ttttgat putative branch site (score: 4)
ttctttttt CT-rich tract
aaattcttttttgat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
actataatgctaattaatgtgctcaaaaaaattactgcttagctcctttttgttacctattggcaatgaggagctatggtgaaattcttttttgatgcagCTATACTGTTTTGAGGATCGGGGAAATCGCCGTGTTGCATTAAGGCCTGAGCTCACTCCTTCTTTGGCAAGACTTGTGATACAGAAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - -aatgtgc
- - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - -tgcttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caatgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctatgg