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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcttgtacaataattttttatttttagatatataccataccatatatatttgaatcgatattattgcagaattacatttaatatttctcatgaaaatgtggcagCCATCTATGTGGATGAAGATGATATAGCCATGTACACTATCAAAACCATAGACGATCCACGAACCCTGAATAAAACACTCTACCTGAGGCCACCCCAGAA

Basic information

species Vitis vinifera
transcript Vv08s0040g00550.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0040g00550.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA0317S00200.1 (Glycine max), 3'ss of exon 2
gtgcttgtacaataattttttatttttagatatataccatacca----tatatatttgaa-----tcgatattattg--cagaattacatttaatatttctcatgaaaatgtggcagCCATCTATGTGGATGAAGATGATATAGCCATGTACACTATCAAAACCATAGACGATCCACGAACCCTGAATAAAACACTCTACCTGAGGCCACCCCAGAA
  |   ||  | | || |||   |  || | || |   ||  |     |  ||  |||||     || | |  |||     ||| || || |  |   |||| ||||  | ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| || ||  |||| | ||| || ||| | ||| | ||||||||  | ||
--gtaagtgaactgatctttatgtcctataaatgttttatgactcttctgaattcttgaaactgttccacacaatttgtttgaactatatatg-tgcatctcttgaa--tttggcagCTATCTATGTGGATGAAGATGATATAGCTATGTACACTATCAAAACCATAGATGACCCCAGAACACGGAACAAGACAGTTTACATAAGGCCACCTGAAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|28969897|gb|CB348930.1|CB348930
EST:     CCTTCCTTCAAGGGATCATGTGGTTTTACTAGGAGACGGCAACCAAAAAG                         CCATCTATGTGGATGAAGATGATATAGCCATGTACACTATCAAAACCATAG
genomic: CCTTCCTTCAAGGGATCATGTGGTTTTACTAGGAGACGGCAACCAAAAAGgtgcttgtac ... aatgtggcagCCATCTATGTGGATGAAGATGATATAGCCATGTACACTATCAAAACCATAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgaatcgatattattgcagaattacatttaatatttctcatgaaaatgtggcagCCATCTATGTGGATGAAGATGATATAGCCATGTACACTATCAAAACCATAGACGATCCACGAACCCTGAATAAAACACTCTACCTGAGGCCACCCCAGAA
                          atttaat  putative branch site (score: 4)
        atattattgcagaatt  TA-rich tract