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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgtttctatgatttttctttcttccttctgttgttttctggtgtttgggattttttttgatgttggattttggttgttgcggggtttagGGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATG

Basic information

species Vitis vinifera
transcript Vv08s0040g00410.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0040g00410.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA05G14330.2 (Glycine max), 3'ss of exon 2
-------gtgagtgtttctatgatttttctttcttcc----ttctgttgttttctggtgtttgggattttttttgatgttggatt-ttggttg----ttgcggggtttagGGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATG
        |   | || ||   |||||    |         || |  ||  ||    | |||   ||||||||||   |    || || ||||    ||  ||||||||||| || |||||||||||  |||| || |||||| | |||||||||||||||||||| || || || ||||| || ||||| |||
gtaggtttttttttttcctgaaattttctggtgcattagggtttttatgcgtttatttttttttaattttttttggaataattttattagttggggtttttggggtttagGGCGTTGAGAAGCTTATTCCGTCGAAAATGATGCTTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATG

upper sequence: Vv08s0040g00410.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA19G17920.1 (Glycine max), 3'ss of exon 2
gtgagtgtttctatgatttttctttcttccttctgttgttttctggtgtttgggattttttttga-----tgttggattttg---gttg---ttgcggggtttagGGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATG
||  || ||| | |||  |||  |  | | ||  | | | || | ||||||    |||| ||| |     ||    |||||    ||||   ||  ||| ||||||| || |||||||||||  |||| || |||||| | |||||||||||||||||||| || || || ||||| || ||||| |||
gtaggt-tttttctgaaattttctggtgcattagggtttcttttagtgtttatttttttatttaaaaaattgaataattttatgagttgggtttttgggctttagGGCGTTGAGAAGCTTATTCCGTCGAAAATGATGCTTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATG

upper sequence: Vv08s0040g00410.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: PP1S72_57V6.4 (Physcomitrella patens), 3'ss of exon 4
------------------------------------------------------------------gtgagtgtttctatgatttttctttcttccttct-gttgttttctggtgtttggga--ttttttttgatgttgg-attttggttgttgcg----------gggttt---------agGGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATG
                                                                  |  |     | | | |||||| ||     | | | |||    | || |  ||| ||      |||  ||||    |||   ||   || |          || |||         |||||||||||||||||||  | ||||| ||| |||||  ||| |||||||| ||||||||| ||||| |||| ||| ||||||||
gtactatatgcttataacttaattattgaccttgtttttggttgtgagattattaattcctctcatgctaaaacatgtttcattttttttcaacacatttagttcgagtatgttaattgtgaaacccgtttccatgtgaacattcctgtcactgagatcaatatgcggattttctcgtcacagGGAGTAGAGAAGCTTATTTCCTCCAAAATGTTGTTGGAGGGCTCCAATAGGAGAATTCATGCTGTGGATCGACATGCTGGCATG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34545358|gb|CF513590.1|CF513590
EST:     GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG                         GGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
genomic: GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTGgtgagtgttt ... cggggtttagGGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
EST: gi|87584053|gb|DY473356.1|DY473356
EST:     GACCGTCATTCGGGATTAAATGCAAAGATGGGATTGTCTTG                         GGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
genomic: GACTGTCATT-GGGATTAAATGCAAAGATGGGATTGTCTTGgtgagtgttt ... cggggtttagGGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
EST: gi|110712939|gb|EE088423.1|EE088423
EST:     GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG                         GGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
genomic: GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTGgtgagtgttt ... cggggtttagGGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
EST: gi|351026032|gb|FQ428044.1|FQ428044
EST:     GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG                         GGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
genomic: GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTGgtgagtgttt ... cggggtttagGGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
EST: gi|351016637|gb|FQ424064.1|FQ424064
EST:     GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG                         GGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
genomic: GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTGgtgagtgttt ... cggggtttagGGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
EST: gi|110689940|gb|EE066605.1|EE066605
EST:     GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG                         GGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
genomic: GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTGgtgagtgttt ... cggggtttagGGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
EST: gi|161710249|gb|FC058959.1|FC058959
EST:     GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG                         GGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
genomic: GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTGgtgagtgttt ... cggggtttagGGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
EST: gi|110405352|gb|EC970893.1|EC970893
EST:     GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG                         GGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
genomic: GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTGgtgagtgttt ... cggggtttagGGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
EST: gi|110719773|gb|EE095192.1|EE095192
EST:     GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG                         GGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
genomic: GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTGgtgagtgttt ... cggggtttagGGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
EST: gi|37185131|gb|CF604484.1|CF604484
EST:     GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG                         GGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
genomic: GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTGgtgagtgttt ... cggggtttagGGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
EST: gi|110720841|gb|EE097126.1|EE097126
EST:     GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG                         GGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
genomic: GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTGgtgagtgttt ... cggggtttagGGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
EST: gi|34545280|gb|CF513512.1|CF513512
EST:     GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG                         GGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
genomic: GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTGgtgagtgttt ... cggggtttagGGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
EST: gi|161715533|gb|FC069462.1|FC069462
EST:     GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG                         GGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
genomic: GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTGgtgagtgttt ... cggggtttagGGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
EST: gi|349829839|gb|FQ422152.1|FQ422152
EST:     GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG                         GGAGTAGAGAAGCTTATAGCGTCCAAGATGATATTGCCGGGTTCCAATAGA
genomic: GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTGgtgagtgttt ... cggggtttagGGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
EST: gi|351012831|gb|FQ430394.1|FQ430394
EST:     GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG                         GGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
genomic: GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTGgtgagtgttt ... cggggtttagGGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
EST: gi|110428341|gb|EC994810.1|EC994810
EST:     ATTAAATGCAAAGATGGGATTGTCTTG                         GGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
genomic: ATTAAATGCAAAGATGGGATTGTCTTGgtgagtgttt ... cggggtttagGGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
EST: gi|110702145|gb|EE080525.1|EE080525
EST:     GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG                         GGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
genomic: GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTGgtgagtgttt ... cggggtttagGGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
EST: gi|71880094|gb|DT029149.1|DT029149
EST:     GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG                         GGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
genomic: GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTGgtgagtgttt ... cggggtttagGGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
EST: gi|351017561|gb|FQ435914.1|FQ435914
EST:     GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG                         GGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
genomic: GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTGgtgagtgttt ... cggggtttagGGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
EST: gi|34543966|gb|CF512198.1|CF512198
EST:     GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG                         GGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
genomic: GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTGgtgagtgttt ... cggggtttagGGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
EST: gi|71880613|gb|DT029668.1|DT029668
EST:     GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG                         GGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
genomic: GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTGgtgagtgttt ... cggggtttagGGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
EST: gi|110720821|gb|EE097078.1|EE097078
EST:     GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG                         GGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
genomic: GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTGgtgagtgttt ... cggggtttagGGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
EST: gi|110718292|gb|EE094957.1|EE094957
EST:     GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG                         GGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
genomic: GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTGgtgagtgttt ... cggggtttagGGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
EST: gi|351033938|gb|FQ462993.1|FQ462993
EST:     GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG                         GGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
genomic: GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTGgtgagtgttt ... cggggtttagGGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
EST: gi|110727594|gb|EE104529.1|EE104529
EST:     GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG                         GGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
genomic: GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTGgtgagtgttt ... cggggtttagGGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
EST: gi|294963862|gb|GW836737.1|GW836737
EST:     GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG                         GGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
genomic: GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTGgtgagtgttt ... cggggtttagGGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
EST: gi|110707900|gb|EE084829.1|EE084829
EST:     GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG                         GGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
genomic: GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTGgtgagtgttt ... cggggtttagGGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
EST: gi|351023141|gb|FQ432524.1|FQ432524
EST:     GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG                         GGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
genomic: GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTGgtgagtgttt ... cggggtttagGGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
EST: gi|349823527|gb|FQ414937.1|FQ414937
EST:     GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG                         GGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
genomic: GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTGgtgagtgttt ... cggggtttagGGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
EST: gi|71879184|gb|DT028239.1|DT028239
EST:     GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG                         GGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
genomic: GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTGgtgagtgttt ... cggggtttagGGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
EST: gi|161719434|gb|FC067375.1|FC067375
EST:     GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG                         GGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
genomic: GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTGgtgagtgttt ... cggggtttagGGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
EST: gi|351029065|gb|FQ435265.1|FQ435265
EST:     GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG                         GGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
genomic: GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTGgtgagtgttt ... cggggtttagGGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
EST: gi|161712773|gb|FC061997.1|FC061997
EST:     GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG                         GGAGTAGATAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
genomic: GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTGgtgagtgttt ... cggggtttagGGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
EST: gi|110428899|gb|EC995383.1|EC995383
EST:     GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG                         GGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
genomic: GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTGgtgagtgttt ... cggggtttagGGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
EST: gi|37184434|gb|CF603788.1|CF603788
EST:     GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG                         GGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
genomic: GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTGgtgagtgttt ... cggggtttagGGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
EST: gi|110713723|gb|EE089893.1|EE089893
EST:     GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG                         GGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
genomic: GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTGgtgagtgttt ... cggggtttagGGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
EST: gi|110686023|gb|EE063265.1|EE063265
EST:     GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG                         GGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
genomic: GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTGgtgagtgttt ... cggggtttagGGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
EST: gi|30253109|gb|CB970660.1|CB970660
EST:     GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG                         GGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
genomic: GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTGgtgagtgttt ... cggggtttagGGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
EST: gi|351021754|gb|FQ437139.1|FQ437139
EST:     GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG                         GGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA
genomic: GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTGgtgagtgttt ... cggggtttagGGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctggtgtttgggattttttttgatgttggattttggttgttgcggggtttagGGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATG
                    ttttgat  putative branch site (score: 4)
               attttttttgatgtt  TA-rich tract