Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcaaacaactctctgcccttctcccttcctcactcatggtcatatgcatcatagtttgcagaacaagtaatacagctgttgagttttatagcttttaactgaaaagtctgaaataaacttcatgttctgctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTTCCTCACAAAGGCTAGAAAGTACACCTTTTTTAAGCCCAAGTTCATCTTC

Basic information

species Vitis vinifera
transcript Vv08s0040g00390.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0040g00390.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os01g17170.1 (Oryza sativa), 3'ss of exon 2
-------------------------------------gtatgcaaacaactctctgcccttctcccttcctcactcatggtcatatgcatcatagtttgc-agaacaagtaa--tacagctgttgag------ttttatagcttttaactgaaaagtctga---aataaacttcatg--ttctgctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTTCCTCACAAAGGCTAGAAAGTACACCTTTTTTAAGCCCAAGTTCATCTTC
                                       |   | ||||     |  |   |  || |    |||||   | |  || | |||   | |  | || |  |||  | ||| | | | |      ||| |   |  || | | |  | |   |   |||   || ||||  || ||||||| ||| ||  ||||||| ||  | ||||||||||| |||||  ||||| | |||||| | || |||||||| ||||||||||| || ||||||||||||||||||
gtaagtagtagtaacacactctaaattatttccttgcacaatgacacaatgtgattgcaagcagccattacaactcaaattgaactgtaccatgactagagaaaatatttaagcttcagttttagggcgtccatttcaactcaattgagtaagcaattcaactgaattgtctgcatgatttatgctgtt-cagGTTCTTGAACAAGGGGCTGTCTGATTTCAACTTGGCACTGGACCTCGGGTTCTTGACCAAGGCTAGGAAGTACACCTTCTTCAAGCCCAAGTTCATCTTC

upper sequence: Vv08s0040g00390.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G043109_T01 (Zea mays), 3'ss of exon 2
gtatgcaaacaactctctgcccttctcccttcctcactcatggtcatatgcatcatagtttgcagaacaagtaatacagctgttgagttttatagcttttaactgaaaagtctgaaataaacttcatgttctgctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTTCCTCACAAAGGCTAGAAAGTACACCTTTTTTAAGCCCAAGTTCATCTTC
                    | | |    || |    |  || |||     ||   ||  |  ||   || | ||   |   | |||   |  ||||         ||||| | |  | |  | ||    |||    || || ||| ||||||| ||| | ||||| ||||| |||||  ||||| ||||||||||||| |||||||| ||||||||||| || ||||||||||||||||||
--------------------catgcatgttttcctgattgtgttca-----atttgaggctctagggtaa-tgatgagggcatggagaaattcagct--------gaaagtttcatgtgatttgca----ctg----tgtagGTTTTTGAACAAGGGTCTGTCTGACTTCAACTTGGCGCTGGACCTGGGGTTCCTCACCAAGGCTAGGAAGTACACCTTCTTCAAGCCCAAGTTCATCTTC

upper sequence: Vv08s0040g00390.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G081462_T02 (Zea mays), 3'ss of exon 2
gtatgcaaacaactctctgcccttctcccttcctcactcatggtcatatgcatcatagtttgcagaacaagtaatacagctgttgagttttatagcttttaactgaaaagtctgaaataaacttcatgttctgctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTTCCTCACAAAGGCTAGAAAGTACACCTTTTTTAAGCCCAAGTTCATCTTC
                                              || ||| | ||  ||      |   | || ||   |  |||   |  ||||         ||||| | |  | |  | ||    ||| |     || ||  ||||||| ||  | ||||| ||||| |||||  ||||| |||||||||| || |||||||| ||||||||||| || ||||||||||||||||||
---------------------------------------------gtacgcacc-taccttatct--cttttcatccattcggggagaaattcagct--------gaaagtttcatgtgatttgcactcactgtt----tagGTTCTTGAACAAGGGGCTGTCTGACTTCAACTTGGCGCTGGACCTGGGGTTCCTGACCAAGGCTAGGAAGTACACCTTCTTCAAGCCCAAGTTCATCTTC

upper sequence: Vv08s0040g00390.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA19G30350.1 (Glycine max), 3'ss of exon 2
gtatgcaaacaactctctgcccttctcccttcctcactcatggtcatatgcatcatagtttgcagaacaagtaatacagctgttgagttttatagcttttaactgaaaagtctgaaataaacttcatgttctgctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTTCCTCACAAAGGCTAGAAAGTACACCTTTTTTAAGCCCAAGTTCATCTTC
||||| | ||| || | |||| ||     ||| | | ||    || |     || || ||   |   |   | | |    ||||| ||   || || |       |  | | |||             |||||    ||||| ||| |||||||||||||||||||||| ||||||||| |||||||||| ||| | || || |||||||| ||||| ||||| ||||||||||| ||||||
gtatggacacacct-tgtgcctttaa---ttcttaattctcattctttcatttcctatttgatatctcgtttga-atgtttgttgtgt---atggcctc------attattttga-------------ttctg----tgcagGTTTTTGAACAAAGGTTTATCTGATTTTAATTTGGCTCTGGACTTGGGTTTCTTGACCAAAGCTAGAAAATACACATTTTTCAAGCCCAAGTTTATCTTC

upper sequence: Vv08s0040g00390.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA03G27380.1 (Glycine max), 3'ss of exon 2
gtatgcaaacaactctctgcccttctcccttcctcactcatggtcatatgcatcatagtttgcagaacaagtaatacagctgttgagttttatagcttttaactgaaaagtctgaaataaacttcatgttctgctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTTCCTCACAAAGGCTAGAAAGTACACCTTTTTTAAGCCCAAGTTCATCTTC
                                       ||||  | | || |  |   ||  |     | | || |   | ||   |||| ||  |  || ||     ||     || | ||   | |  | |||| |||| ||| ||||||| |||||||||||||||||||||||| |||||||||| ||| | || || |||||||| ||||| ||||| ||||| ||||| ||||||
-------------------------------------gtatgg--aaacgccttgtgcctttaatttttaattatcc--ttctttgattttctatttgatatcttgtttgtagtgcatgacctcattttgattctgt-gcagGTTTTTGAACAAGGGTTTATCTGATTTCAATTTGGCTCTGGACTTGGGTTTCTTGACCAAAGCTAGAAAATACACATTTTTCAAGCCAAAGTTTATCTTC

upper sequence: Vv08s0040g00390.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT3G56940.2 (Arabidopsis thaliana), 3'ss of exon 3
gtatgcaaacaactctctgcccttctcccttcctcactcatggtcatatgcatcatagtttgcagaacaagtaatacagctgttgagttttatagcttttaactgaaaagtctgaaataaacttcatgttctgctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTTCCTCACAAAGGCTAGAAAGTACACCTTTTTTAAGCCCAAGTTCATCTTC
                                                                    |||   |        | ||         ||||||   ||  || | || |    |        |  | | |||| ||  ||||||| || || ||||||||||| |||||| | || ||||| ||||| |||||||| || || ||||| || || ||||| || |||||||||
------------------------------------------------------------------gtaagatctcttaacactaaggacctctctttttaatctaagtgtttcaattttgatgataaactttttttggcagGTTCTTGAACAAGGGATTGTCTGATTTCAACTTGGCTCTTGATTTGGGTTTCCTGACAAAGGCAAGGAAATACACTTTCTTCAAGCCAAAATTCATCTTC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110732253|gb|EE107380.1|EE107380
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGGACTTGGGGT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGG-ACTTGGGGT
EST: gi|352791502|gb|FQ481081.1|FQ481081
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|28969822|gb|CB348855.1|CB348855
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|352778429|gb|FQ465739.1|FQ465739
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTTGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|294965645|gb|GW837244.1|GW837244
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAAATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGGTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|30322726|gb|CD005988.1|CD005988
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|110724517|gb|EE100412.1|EE100412
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|351026713|gb|FQ436366.1|FQ436366
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|351055180|gb|FQ440519.1|FQ440519
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|161714870|gb|FC063021.1|FC063021
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|71870159|gb|DT019214.1|DT019214
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|77580042|gb|DV218905.1|DV218905
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTT
EST: gi|351048585|gb|FQ448859.1|FQ448859
EST:     GTGGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|110729798|gb|EE106146.1|EE106146
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|32269653|gb|CD718812.1|CD718812
EST:     GAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|161706635|gb|FC055865.1|FC055865
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|110712749|gb|EE088065.1|EE088065
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|349821299|gb|FQ404431.1|FQ404431
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|71868014|gb|DT017069.1|DT017069
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|161717571|gb|FC067882.1|FC067882
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|110413967|gb|EC979787.1|EC979787
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|32269889|gb|CD719048.1|CD719048
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|110357447|gb|EC920994.1|EC920994
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|351017331|gb|FQ435683.1|FQ435683
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|110733128|gb|EE109048.1|EE109048
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|110690290|gb|EE067270.1|EE067270
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGCGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|33402633|gb|CF208260.1|CF208260
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|110377336|gb|EC942399.1|EC942399
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|351025889|gb|FQ427901.1|FQ427901
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|351016901|gb|FQ424328.1|FQ424328
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|349831084|gb|FQ420754.1|FQ420754
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|71890449|gb|DT039504.1|DT039504
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|32269860|gb|CD719019.1|CD719019
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGNGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|349825386|gb|FQ418107.1|FQ418107
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|349823490|gb|FQ414900.1|FQ414900
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|110701920|gb|EE080044.1|EE080044
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAAGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|71872375|gb|DT021430.1|DT021430
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|351014021|gb|FQ434173.1|FQ434173
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|29785892|gb|CB343233.2|CB343233
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|110368306|gb|EC932277.1|EC932277
EST:     CCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: CCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|351053845|gb|FQ441611.1|FQ441611
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|110688738|gb|EE067634.1|EE067634
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|110731742|gb|EE106421.1|EE106421
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|110395920|gb|EC961594.1|EC961594
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|110404884|gb|EC970409.1|EC970409
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACA
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACA
EST: gi|110395617|gb|EC961284.1|EC961284
EST:     GTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAAGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|26265284|gb|CA816347.1|CA816347
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|110393414|gb|EC958633.1|EC958633
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|110717714|gb|EE093810.1|EE093810
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|351025174|gb|FQ433591.1|FQ433591
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
EST: gi|351039374|gb|FQ461241.1|FQ461241
EST:     GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGG                         ATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT
genomic: GTAGCTGAGATTTTCTCTCTTATGTCCAGAGATGAAGCCAGGCATGCTGGgtatgcaaac ... gctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttatagcttttaactgaaaagtctgaaataaacttcatgttctgctgttgcagATTTCTGAACAAAGGTTTATCTGATTTCAATTTGGCTTTGGACTTGGGGTTCCTCACAAAGGCTAGAAAGTACACCTTTTTTAAGCCCAAGTTCATCTTC
         ttttaac  putative branch site (score: 2)
                                         ttctgct  putative PPT
                           aaataaactt  TA-rich tract