Sequence
atgc intronic sequence ATGC exonic sequence...tagtttcacactgagtatttatccttttttgtctgcttctttgctctttggttgcaacgatccagatgactttaactggggtttttttttttgggtccagAAATCATTTGACGAAGCCATGGAGTCCATTGGGAAGGCAAAAGCACATAAAGATGACATGTAAAAGGGGCTATCCATGATTTTCATTGTATGCTTTCCTC
Basic information
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161718252|gb|FC066022.1|FC066022EST: CGATAATTGATAGGAGTGGGGAGACACTATGGAAGATGAACAATTCTGGG AAATCATTTGACGAAGCCATGGAGTCCATTGGGAAGGCAAAAGCACATAAA
genomic: CAATAATTGATAGGAGTGGGGAGACACTATGGAAGATGAACAATTCTGGGgtacgtgtct ... ttgggtccagAAATCATTTGACGAAGCCATGGAGTCCATTGGGAAGGCAAAAGCACATAAA
EST:
gi|110391433|gb|EC956409.1|EC956409EST: CGATAGTTGATAGGAGTGGGGAGACACTATGGAAGATGAACAATTCTGGG AAATCATTTGACGAAGCCATGGAGTCCATTGGGAAGGCAAAAACACATAAA
genomic: CAATAATTGATAGGAGTGGGGAGACACTATGGAAGATGAACAATTCTGGGgtacgtgtct ... ttgggtccagAAATCATTTGACGAAGCCATGGAGTCCATTGGGAAGGCAAAAGCACATAAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctttggttgcaacgatccagatgactttaactggggtttttttttttgggtccagAAATCATTTGACGAAGCCATGGAGTCCATTGGGAAGGCAAAAGCACATAAAGATGACATGTAAAAGGGGCTATCCATGATTTTCATTGTATGCTTTCCTC
ctttaac putative branch site (score: 3)
ttttttttttt putative PPT
ttttttttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tagtttcacactgagtatttatccttttttgtctgcttctttgctctttggttgcaacgatccagatgactttaactggggtttttttttttgggtccagAAATCATTTGACGAAGCCATGGAGTCCATTGGGAAGGCAAAAGCACATAAAGATGACATGTAAAAGGGGCTATCCATGATTTTCATTGTATGCTTTCCTC
- - - cacactg
- - - - - - - - - - - - - - - - ctgcttc
- - - - - - - - - - - - - - - - - - - - - - - - - -ttgcaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccagatg