Sequence
atgc intronic sequence ATGC exonic sequence...catattcatgtctgttgttttgatggtacccctgtagttgtctatggttagcctaaatcttacaaattctcttcttgattttgtgcttgtggaaagaaagCCATGCATATAACAAGGGGAAGACACTTGTTGTCAGCAAAGTTCCATTGCCAAATTACCGGGCTGATCTTGATGAACGCCATGGATCCACACAAAAAGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0032g01230.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G399212_T01 (Zea mays), 3'ss of exon 4
------catattcatgtctgttgttttgatggtacccctgtagttgtctatggttagcctaaatcttacaaattctcttcttgattttgtgcttgtggaaagaaagCCATGCATATAACAAGGGGAAGACACTTGTTGTCAGCAAAGTTCCATTGCCAAATTACCGGGCTGATCTTGATGAACGCCATGGATCCACACAAAAAGAG
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tttcaccat-ttgatacctactgttttgcctatgaacc-atactcttcaaagctga---caaattctactttacctggtttgcatttttaacgtg-gggaagatagTAATGCATACAACAAAGGGAAGACACTTGTTTTCAGCAAGGTACCCTTACCTGATTATCGAGCAGATCTGGACGACAGGCATGGATCAACACAAAAGGAG
upper sequence: Vv08s0032g01230.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA02G35240.1 (Glycine max), 3'ss of exon 4
catattcatgtctgttgttttgatggtacccctgtagttg--tctatggttagcctaaatcttacaaattctcttcttgattttgtgcttgtggaaagaaagCCATGCATATAACAAGGGGAAGACACTTGTTGTCAGCAAAGTTCCATTGCCAAATTACCGGGCTGATCTTGATGAACGCCATGGATCCACACAAAAAGAG
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-aagcatagattacctgtactgatgaacattttgagcttaatcttatttttttattttaactaacatcttaatggcttgattt-gtacttgggcaaagaaagCCATGCTTATAGTAAGGGGAAGGTTCTCATTGTTAGCAAAGTTCCATTGCCTGATTATCGTGCAGATCTTGATGAGCGTCATGGATCAACACAGAAAGAG
upper sequence: Vv08s0032g01230.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT2G35920.1 (Arabidopsis thaliana), 3'ss of exon 2
-catattcatgtctgttgttttgatggtacccctgtagttgtctatggttagcctaaatcttacaaattctcttcttgattttgtgcttgtggaaagaaagCCATGCATATAACAAGGGGAAGACACTTGTTGTCAGCAAAGTTCCATTGCCAAATTACCGGGCTGATCTTGATGAACGCCATGGATCCACACAAAAAGAG
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gtaagtctctatatctt-cttcgacaacttcgttttaagtccatatggtgagagtatgtc--atgaatttgcttatcgttttt-------tggaatggaagTCATGCGTACAATAAAGGGAAGGCTCTTGTTGTTAGCAAAGTTCCTTTACCAGATTATCGAGCGGATCTTGATGAACGGCATGGATCCACTCAGAAAGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggttagcctaaatcttacaaattctcttcttgattttgtgcttgtggaaagaaagCCATGCATATAACAAGGGGAAGACACTTGTTGTCAGCAAAGTTCCATTGCCAAATTACCGGGCTGATCTTGATGAACGCCATGGATCCACACAAAAAGAG
taaatcttacaaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
catattcatgtctgttgttttgatggtacccctgtagttgtctatggttagcctaaatcttacaaattctcttcttgattttgtgcttgtggaaagaaagCCATGCATATAACAAGGGGAAGACACTTGTTGTCAGCAAAGTTCCATTGCCAAATTACCGGGCTGATCTTGATGAACGCCATGGATCCACACAAAAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - -tcatgtc
- - - - - - - - - - tgatggt
- - - - - - - - - - - - - - cccctgt
- - - - - - - - - - - - - - - - - - - - - - tggttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgcttg