Sequence
atgc intronic sequence ATGC exonic sequence...ttttattttttattttttttaataaaacatttctggaataaaataatagattcttgcaacttaatttctctacatgctaagccatcacatatttctgcagACATCTCCTGGGAAGGGAGGAGCTTATCTGTATGATATCCACTTTTGGATTGGAAAAGATACAAGTCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g08690.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA03G29280.1 (Glycine max), 3'ss of exon 2
ttttattttttattttttttaataaaacatttctggaataaaataatagat-tcttgcaacttaatttctctacatgctaagc-----catcacatatttctgcagACATCTCCTGGGAAGGGAGGAGCTTATCTGTATGATATCCACTTTTGGATTGGAAAAGATACAAGTCAG
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----acaaatgaaagtcttcaataaaa--ttccaatattaagtggagagatatatttctactttttgtttaaaaatattgggtgttgatttcaagtttatttgcagACAACACAAGGCAAAGGAAGTGCTTATTTGTATGATATTCACTTCTGGATTGGAAAGGATACAAGTCAG
upper sequence: Vv08s0007g08690.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA19G32010.1 (Glycine max), 3'ss of exon 3
ttttattttttattttttttaataaaacatt--tctggaataaaataatagattcttgcaacttaatttctctacatgctaagcca---tcacatatttctgcagACATCTCCTGGGAAGGGAGGAGCTTATCTGTATGATATCCACTTTTGGATTGGAAAAGATACAAGTCAG
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-----caaatgatagtcttcaataaaattccaatattgagtggagatatatatttctactttttgttttaaaagtattgggtgttgatttcaagtttatttgcagACAACACAAGGCAAAGGAGGTGCTTATTTGTATGACATTCACTTCTGGATTGGAAAGGATACAAGTCAG
upper sequence: Vv08s0007g08690.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA10G21350.2 (Glycine max), 3'ss of exon 2
------------------------------------------------ttttattttttattttttttaataaaacatttctggaataaaataatagattcttgcaacttaatttc-tcta-------catgctaagccatcacatatt---tctgcagACATCTCCTGGGAAGGGAGGAGCTTATCTGTATGATATCCACTTTTGGATTGGAAAAGATACAAGTCAG
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gtctgagctatatccaatattacctttgatgcattcatatatatatgaatgtatctggtgttgctgttcataatttcatta-agtgtgaaata-taggttgttgtctttttcttccatttaaaaaaactgtgtttattttgtgtgtattgtatctacagACAACTCAAGGCAAAGGAGGCACTTATTTTTATGATTTACACTTTTGGATTGGAAAGGATACAAGTCAG
upper sequence: Vv08s0007g08690.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT3G57410.1 (Arabidopsis thaliana), 3'ss of exon 4
----------------------------------------------------------ttttattttttattttttttaataaaaca------tttctgg---aataaaata-atagattct-tgcaacttaatttctctacatgctaagc-----catcacatatttctgcagACATCTCCTGGGAAGGGAGGAGCTTATCTGTATGATATCCACTTTTGGATTGGAAAAGATACAAGTCAG
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gttttgatttttttcactcttcttctcccctttttatagactcttatcaagaatagataataagatattagcttacagaacaggacaacatgctttcttgtctgatcatatgtataaaatatatgctcctttattatctttcacatttatcatgattagctttcatatgtgcagACCACACAGAATAAGGGTGGCGCTTATCTATTTGATATACATTTTTGGATTGGTAAAGATACAAGCCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atagattcttgcaacttaatttctctacatgctaagccatcacatatttctgcagACATCTCCTGGGAAGGGAGGAGCTTATCTGTATGATATCCACTTTTGGATTGGAAAAGATACAAGTCAG
acttaat putative branch site (score: 4)
tatttct putative PPT
aacttaattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttttattttttattttttttaataaaacatttctggaataaaataatagattcttgcaacttaatttctctacatgctaagccatcacatatttctgcagACATCTCCTGGGAAGGGAGGAGCTTATCTGTATGATATCCACTTTTGGATTGGAAAAGATACAAGTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - aataaaa
- - - - - - - - - - - - - - -tttctgg
- - - - - - - - - - - - - - - - - - - -aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - -ttgcaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatcac