Sequence
atgc intronic sequence ATGC exonic sequencegttcagctttgcctattttattattcatatgattgcaagcattgaggaaggaaagtagatttaattatgctgaattctctatttgttttgcagAATGCTTATGAAAATGGGTATACCAAACTTCTTTTGGGATCATGCACATCGAGGATTGCTTGCCATGTGATTTCTGCAACTGTGAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g08560.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA03G29320.2 (Glycine max), 3'ss of exon 2
------gttcagctttgcctattttattatt--------catatgattgcaagcattgaggaag-gaaagt---agatttaattatgctgaattctctatttgttttgcagAATGCTTATGAAAATGGGTATACCAAACTTCTTTTGGGATCATGCACATCGAGGATTGCTTGCCATGTGATTTCTGCAACTGTGAAG
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gtttgtttctggatgttgttgtcatattattgtgaattatctctggttgaagcttgtaaacacgtgtttgtttgagagtgagtttgtttgaaattctttatggttgtacagGTTGCTTCTGAATTTGGGTATAACAGGATCATTCTGGGGTCATGCATTTCGAGGATTGCTTGCCATGTCATTTCAGCCACTGTGAAG
upper sequence: Vv08s0007g08560.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA19G32060.1 (Glycine max), 3'ss of exon 3
gttcagctttgcctattttattattcatatgattgcaagcattgaggaaggaaagtagatttaattatgctgaattctctatttgttttgcagAATGCTTATGAAAATGGGTATACCAAACTTCTTTTGGGATCATGCACATCGAGGATTGCTTGCCATGTGATTTCTGCAACTGTGAAG
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------------------------------------------------------gtgagtttgtttg----aaattcttt-ttggttgtatagGTTGCTTCTGAATTTGGGTATAACAGGATCATTCTGGGGTCATGCATTTCGAGGATTGCTTGCCATGTCATTTCAGCCACTGTGAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcattgaggaaggaaagtagatttaattatgctgaattctctatttgttttgcagAATGCTTATGAAAATGGGTATACCAAACTTCTTTTGGGATCATGCACATCGAGGATTGCTTGCCATGTGATTTCTGCAACTGTGAAG
atttaat putative branch site (score: 4)
ttctctatttgtttt putative PPT
aaagtagatttaatta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttcagctttgcctattttattattcatatgattgcaagcattgaggaaggaaagtagatttaattatgctgaattctctatttgttttgcagAATGCTTATGAAAATGGGTATACCAAACTTCTTTTGGGATCATGCACATCGAGGATTGCTTGCCATGTGATTTCTGCAACTGTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT