Sequence
atgc intronic sequence ATGC exonic sequence...tcaaaatgtttctcatgatgctgccctaggttattgtaaagaggaaaatatgaataattgatatgtgatctaatttataactccacaatgaaatggctagGAATGTTTTTAAGAAGGATGAGCTCGGTCTTGAGATAGCACAGATTGCATTCCCGGCAGCATTGGCTTTAACAGCAGACCCTATTGCTTCTCTAATTGAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g08200.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA02G31370.1 (Glycine max), 3'ss of exon 1
----------------------------------------------------------------------------tcaaaatgtttctcatgatgctgccctaggttattgtaaagaggaaaatatgaataattgatatgtgatctaatttataactccacaatgaaatggctagGAATGTTTTTAAGAAGGATGAGCTCGGTCTTGAGATAGCACAGATTGCATTCCCGGCAGCATTGGCTTTAACAGCAGACCCTATTGCTTCTCTAATTGAC
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gtaccatttatcgcttgcactgctggtgttctttcaattgaactatgtttctttagctctgcactgttttatgactttgatgaaatttggatgaagttttccttggtttactagttgtgatagatattga--attcata-ataattgaagggatcatatcatcttatgctttc-agGAATGCTTTCTCAAGTGATGAATTAGGCTTGGAAATACTGAATATTGCACTCCCTACTACTCTGGCTTTGGCAGCAGATCCTATTGCTTCTCTAATTGAT
upper sequence: Vv08s0007g08200.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA10G21860.1 (Glycine max), 3'ss of exon 1
-----------------------------------------tcaaaatgtttctcatgatgctgccctaggttattgtaaagaggaaaatatgaataattgatatgtgatctaatttataactccacaatgaaatggctagGAATGTTTTTAAGAAGGATGAGCTCGGTCTTGAGATAGCACAGATTGCATTCCCGGCAGCATTGGCTTTAACAGCAGACCCTATTGCTTCTCTAATTGAC
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gtactgtttattttcttgcataattgcactgtttaatgactttggtgaaacttggatgaagttttccttggtt--tacaagttgtgatagatattgaattcata-atgattgaagggatcatattatcttatgctttc-agGAATGCTTTCTCAAGTGATGAATTAGGCTTGGAAATACTGAATATTTCGCTCCCTACTACGCTGGCTTTGGCAGCAGATCCTATTGCTTCTCTAATTGAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaatatgaataattgatatgtgatctaatttataactccacaatgaaatggctagGAATGTTTTTAAGAAGGATGAGCTCGGTCTTGAGATAGCACAGATTGCATTCCCGGCAGCATTGGCTTTAACAGCAGACCCTATTGCTTCTCTAATTGAC
ttataac putative branch site (score: 2)
aataattgatatgtga TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tcaaaatgtttctcatgatgctgccctaggttattgtaaagaggaaaatatgaataattgatatgtgatctaatttataactccacaatgaaatggctagGAATGTTTTTAAGAAGGATGAGCTCGGTCTTGAGATAGCACAGATTGCATTCCCGGCAGCATTGGCTTTAACAGCAGACCCTATTGCTTCTCTAATTGAC
tcaaaat
- - - - - -ctcatga
- - - - - - - - - -gctgccc
- - - - - - - - - - - - - - - - - -gtaaaga
- - - - - - - - - - - - - - - - - - - - - ggaaaat
- - - - - - - - - - - - - - - - - - - - - - - - -atgaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccaca