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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaataatcatgctaatcttgagttattaatggtttattgatcctgatcccaagattatgcctagaattcttgacttcggttcatcttttcttcttttgacagTGCTTTGGTAGCAAGGGCATTGATTGAGAACCCAAATCTGATAAAGTGGTCATTGTTGTTCAAGGCATTTTCTGGTCTTCTTGCTCTTATATGTGGAAAT

Basic information

species Vitis vinifera
transcript Vv08s0007g07200.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g07200.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA09G15720.1 (Glycine max), 3'ss of exon 2
gtaagtaataatcatgctaatcttgagttattaatggtttattgatcctgatcccaagattatgcctagaattcttgacttcggttcatcttttcttctt-ttgacagTGCTTTGGTAGCAAGGGCATTGATTGAGAACCCAAATCTGATAAAGTGGTCATTGTTGTTCAAGGCATTTTCTGGTCTTCTTGCTCTTATATGTGGAAAT
|| |||||    | |  |||  |   | ||  ||  |||| |||          |||  | || || || || |||| ||    ||||| || ||||  | || ||||||||||||| ||||| ||||||||||||||| | ||| |||||||||||||  | |||||||| || || ||||||||| |||| || || ||||| |||
gtgagtaa----ctttataactt---gctagcaactgtttcttg----------caacttcatcccaagcatacttgtctgaatttcattttctctttgtatttacagTGCTTTGGTGGCAAGAGCATTGATTGAGAACACGAATTTGATAAAGTGGTCTCTTTTGTTCAAAGCTTTCTCTGGTCTTTTTGCCCTGATTTGTGGGAAT

upper sequence: Vv08s0007g07200.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA02G26820.1 (Glycine max), 3'ss of exon 2
gtaagtaataatcatgctaatcttgagttattaatggtttattgatcctgatcccaagattatgcctagaattcttgacttcggttcatcttttcttctt-ttgacagTGCTTTGGTAGCAAGGGCATTGATTGAGAACCCAAATCTGATAAAGTGGTCATTGTTGTTCAAGGCATTTTCTGGTCTTCTTGCTCTTATATGTGGAAAT
|| |||||    | |  |||  |   | ||  ||  |||| |||  |||          | || || || || |||| ||   |||||| || ||||  | || ||||||||||||| ||||| ||||||||||||||| | ||| |||||||||||||  | || ||||| || || | ||||||| ||||||| || ||||| |||
gtgagtaa----cttcataactt---gctaggaactgtttcttgcacct----------tcatcccaagcatacttgtctgaagttcattttctctttgtatttacagTGCTTTGGTGGCAAGAGCATTGATTGAGAACACCAATTTGATAAAGTGGTCTCTTTTTTTCAAAGCTTTCTGTGGTCTTTTTGCTCTGATTTGTGGGAAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccaagattatgcctagaattcttgacttcggttcatcttttcttcttttgacagTGCTTTGGTAGCAAGGGCATTGATTGAGAACCCAAATCTGATAAAGTGGTCATTGTTGTTCAAGGCATTTTCTGGTCTTCTTGCTCTTATATGTGGAAAT
                    tcttgac  putative branch site (score: 3)
                          cttcggttcatctttt  CT-rich tract
              tagaatt  TA-rich tract