1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatcttcttcaatccttcatctacctttcttatcttcaatgttctctatataaaaaatggatggtgattcagtgaattttctttgtatttctgttgggtagGAGTACCACTGCTCAGTAGAGTTCTTTGTATCTCCTTTCTTAGTCCAAGAATGGGAAATGCCCGACAAGAATGGATCAAAGAAGGAAACACTGAGACTCG
species | Vitis vinifera |
transcript | Vv08s0007g06680.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTGGCAGACACCATTTTCGAACCGAAGCTTCTTACTCATTTATATTCGAG GAGTACCACTGCTCAGTAGAGTTCTTTGTATCTCCTTTCTTAGTCCAAGAAEST: gi|71863474|gb|DT012529.1|DT012529
genomic: CTGGCAGACACCATTTTCGAACCGAAGCTTCTTACTCATTTATATTCGAGgtatcttctt ... tgttgggtagGAGTACCACTGCTCAGTAGAGTTCTTTGTATCTCCTTTCTTAGTCCAAGAA
EST: CTGGCAGACACCATTTTCGAACCGAAGCTTCTTACTCATTTATATTCGAG GAGTACCACTGCTCAGTAGAGTTCTTTGTATCTCCTTTCTTAGTCCAAGAAEST: gi|71863998|gb|DT013053.1|DT013053
genomic: CTGGCAGACACCATTTTCGAACCGAAGCTTCTTACTCATTTATATTCGAGgtatcttctt ... tgttgggtagGAGTACCACTGCTCAGTAGAGTTCTTTGTATCTCCTTTCTTAGTCCAAGAA
EST: CTGGCAGACACCATTTTCGAACCGAAGCTTCTTACTCATTTATATTCGAG GAGTACCACTGCTCAGTAGAGTTCTTTGTATCTCCTTTCTTAGTCCAAGAA
genomic: CTGGCAGACACCATTTTCGAACCGAAGCTTCTTACTCATTTATATTCGAGgtatcttctt ... tgttgggtagGAGTACCACTGCTCAGTAGAGTTCTTTGTATCTCCTTTCTTAGTCCAAGAA
tatataaaaaatggatggtgattcagtgaattttctttgtatttctgttgggtagGAGTACCACTGCTCAGTAGAGTTCTTTGTATCTCCTTTCTTAGTCCAAGAATGGGAAATGCCCGACAAGAATGGATCAAAGAAGGAAACACTGAGACTCG
ttttctttgtatttct CT-rich tract
aattttctttgtattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcttcttcaatccttcatctacctttcttatcttcaatgttctctatataaaaaatggatggtgattcagtgaattttctttgtatttctgttgggtagGAGTACCACTGCTCAGTAGAGTTCTTTGTATCTCCTTTCTTAGTCCAAGAATGGGAAATGCCCGACAAGAATGGATCAAAGAAGGAAACACTGAGACTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA