1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...taagatactttctgttagatacttagataaaaattagtgaacattatcatgtgattgatattagtttattaacagtaaagggcaatgctttccatttcagGGGAAGAAGAATGCTTCAGAGGTACACCTCGTATAGAGCTGATGAAAAATGAGATTCAGCGTAACACACTTTCATACTCGAGAAATGGTCCTATAGATCT
species | Vitis vinifera |
transcript | Vv08s0007g05970.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
atcatgtgattgatattagtttattaacagtaaagggcaatgctttccatttcagGGGAAGAAGAATGCTTCAGAGGTACACCTCGTATAGAGCTGATGAAAAATGAGATTCAGCGTAACACACTTTCATACTCGAGAAATGGTCCTATAGATCT
tattaac putative branch site (score: 1)
ctttccatttc putative PPT
atattagtttattaac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taagatactttctgttagatacttagataaaaattagtgaacattatcatgtgattgatattagtttattaacagtaaagggcaatgctttccatttcagGGGAAGAAGAATGCTTCAGAGGTACACCTCGTATAGAGCTGATGAAAAATGAGATTCAGCGTAACACACTTTCATACTCGAGAAATGGTCCTATAGATCT
- - - -ctttctg
- - - - - - - - - - - - - ataaaaa
- - - - - - - - - - - - - - - - - - - - - - - -catgtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacagtaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caatgct