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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgattcttcttcttttttccattgtcaagggtcaggaatctcaaatctttcttgaggatttccttacattttccctttttttttatttttttttattattctttccgagttttctgaatcttttttcactttgtgaatttacagGAAGTGGAGGTGAATCTTATAATTACTGACTACTGTATGCCTGGAATGACAGGCTATGATTTACTCAAAAAAATCAAG

Basic information

species Vitis vinifera
transcript Vv08s0007g05390.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g05390.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os01g72330.1 (Oryza sativa), 3'ss of exon 2
gtatgattcttcttcttttttccattgtcaagggtcaggaatctcaaatctttcttgaggatttccttacattttccctttttttttatttttttttattattctttccg---agttttctgaatcttttttcactttgtgaatttacagGAAGTGGAGGTGAATCTTATAATTACTGACTACTGTATGCCTGGAATGACAGGCTATGATTTACTCAAAAAAATCAAG
                          ||||  |     || |||      ||| ||     ||   || ||| || | |||   ||   || |  |     | |  |||    | ||  |    |  ||||      |||   |  ||||||  | || || || || ||||| ||||||||||| |||||||| |||||||| |||||| | ||||| |   | |||
--------------------------gtcagtgaatgaga-tcttgttcttttttt-----ttctgtttcatgtttcttttgaattggcttctgctgtgcttgcaatccaggaaattaaccatgtggttttctgaactgttggt--acagGAGATTGATGTCAACCTGATAATCACTGACTACTGCATGCCTGGCATGACAGGGTATGATCTGCTCAAGAGGGTGAAG

upper sequence: Vv08s0007g05390.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA19G31320.2 (Glycine max), 3'ss of exon 2
gtatgattcttcttcttttttccattg--tcaagg-gtcaggaatctcaaatcttt--cttgaggatttccttacattttccctttttttttattttttttta--------ttattctttccgagttttctgaatcttttttca--ctttgtgaatttacagGAAGTGGAGGTGAATCTTATAATTACTGACTACTGTATGCCTGGAATGACAGGCTATGATTTACTCAAAAAAATCAAG
||||| |   | || |||| |    ||  | |||| ||    | | | |||  |||  |       ||   ||   |||    |   | |||||||||    |        ||  | |||| | | ||     ||  |||||     ||||||  |||| |||| ||||||||||||||| | || || || |||||||||||||| |||||||||||||| || || || |||||||||
gtatggtgtgtttttttttgttagatgcataaaggtgtttttagttttaaaattttaaccaacttgttgtgttgtgtttgtgttcagtgtttatttttggccacagatcagtttctttttctgggattctgagattgtttttggatttttgtgtctttatagGAGGTGGAGGTGAATCTTGTTATAACAGATTACTGTATGCCTGGCATGACAGGCTATGACTTGCTTAAGAAAATCAAG

upper sequence: Vv08s0007g05390.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA03G28570.1 (Glycine max), 3'ss of exon 2
gtatgattcttcttcttttttccattgt-caagggtcaggaatctcaaatctttcttgaggatttc--cttacattttccctttttttt--tattttttttta------------ttattctttccgagttttctgaatcttttttcacttt--gtgaatttacagGAAGTGGAGGTGAATCTTATAATTACTGACTACTGTATGCCTGGAATGACAGGCTATGATTTACTCAAAAAAATCAAG
||||  |   | || ||  ||  | ||   ||  |       | |    | |   || |  ||||   |  || | ||   || | ||   | ||| |||||             ||  | |||| | | ||     ||  |||||  ||||  |||  |||| |||| ||||||||||||||| | || || || |||||||||||||| |||||||||||||| || || || |||||||||
gtatagtgtgtttttttggttagaatgcataaaaggtgttttttttttttgtaatttaaaaattttaaccaacttgttgtgttgtgttcagtgtttatttttggccacagatcagtttctttttctgggattctgagattgtttttggctttttgtgtctttatagGAGGTGGAGGTGAATCTTGTTATAACAGATTACTGTATGCCTGGCATGACAGGCTATGACTTGCTTAAGAAAATCAAG

upper sequence: Vv08s0007g05390.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT3G57040.1 (Arabidopsis thaliana), 3'ss of exon 2
gtatgattcttcttcttttttccattgtcaagggtcaggaatctcaaatctttcttgaggatttccttacattttccctttttttttatttttttttattattctttccgagttttctgaatcttttttcactttgtgaattt--acagGAAGTGGAGGTGAATCTTATAATTACTGACTACTGTATGCCTGGAATGACAGGCTATGATTTACTCAAAAAAATCAAG
                                                  || ||     ||||   || ||      || || | | ||| || || || || ||   |   ||   |    | | ||   || ||   |||  ||||| ||| || ||||||||||||||||| || || ||||||||||| ||||| || |||||||| ||||| ||| |||||
------------------------------------------------gtttgctcttttatttttgtaaatcactttttcttctgtttttgttgttgttgttgttgttgttattgaagttgttgtgtttgattggttgctttcaacagGTAGTTGAAGTGAATCTTATAATTACAGATTATTGTATGCCTGGCATGACTGGTTATGATTTGCTCAAGAAAGTCAAG

upper sequence: Vv08s0007g05390.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT2G41310.1 (Arabidopsis thaliana), 3'ss of exon 2
gtatgattcttcttcttttttccattgtcaagggtcaggaatctcaaatctttcttgaggatttccttacattttccctttttttttatttttttttattattctttccgagttttctgaatcttttttcactttgtgaatttacagGAAGTGGAGGTGAATCTTATAATTACTGACTACTGTATGCCTGGAATGACAGGCTATGATTTACTCAAAAAAATCAAG
                                | ||||   | |   ||||||     |       | | | ||      |||    ||||    | | |  |  |   ||| ||| |   |  ||| |  |||| |||     |||||||| ||  | ||||| |||||||| || |||||||||||||| ||||| || |||||||| ||||| ||| | |||
--------------------------------gttcag---tttttgatcttttacatga-----ttcaaagttggttactttcgaaatttgcaatgaatggttatattgagatttgtttgtaatttgtggcttt-tgag----cagGAAGTTGAAATAAATCTAATAATTACAGATTACTGTATGCCTGGCATGACTGGTTATGATTTGCTCAAGAAAGTTAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttattattctttccgagttttctgaatcttttttcactttgtgaatttacagGAAGTGGAGGTGAATCTTATAATTACTGACTACTGTATGCCTGGAATGACAGGCTATGATTTACTCAAAAAAATCAAG
     attattcttt  TA-rich tract