1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ggtcttttgtagaagggggaggtcatgatctaaggcactaatgatatctcacattttcttgtctgatcctttgtgtgtttttttcaattattattattagATTCTGTATTCAATTCAGCAAAGCCAAGTAGCCAGGCACCAAGTACCGACCTCCAATTTGGCGCTCTAAATAAG
species | Vitis vinifera |
transcript | Vv08s0007g05170.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGAGCAGTCCCTTGGATTTCGTATAGAGGATGCTGTTGATCTTAGTAGAA ATTCTGTATTCAATTCAGCAAAGCCAAGTAGCCAGGCACCAAGTACCGACCEST: gi|33409731|gb|CF215358.1|CF215358
genomic: GGAGCAGTCCCTTGGATTTCGTATAGAGGATGCTGTTGATCTTAGTAGAAgtatgtattt ... ttattattagATTCTGTATTCAATTCAGCAAAGCCAAGTAGCCAGGCACCAAGTACCGACC
EST: GGAGCAGTCCCTTGGATTTCGTATAGAGGATGCTGTTGATCTTAGTAGAA ATTCTGTATTCAATTCAGCAAAGCCAAGTAGCCAGGCACCAAGTACCGACCEST: gi|110397602|gb|EC963367.1|EC963367
genomic: GGAGCAGTCCCTTGGATTTCGTATAGAGGATGCTGTTGATCTTAGTAGAAgtatgtattt ... ttattattagATTCTGTATTCAATTCAGCAAAGCCAAGTAGCCAGGCACCAAGTACCGACC
EST: GGAGCAGTCCCTTGGATTTCGTATAGAGGATGCTGTTGATCTTAGTAGAA ATTCTGTATTCAATTCAGCAAAGCCAAGTAGCCAGGCACCAAGTACCGACC
genomic: GGAGCAGTCCCTTGGATTTCGTATAGAGGATGCTGTTGATCTTAGTAGAAgtatgtattt ... ttattattagATTCTGTATTCAATTCAGCAAAGCCAAGTAGCCAGGCACCAAGTACCGACC
atctcacattttcttgtctgatcctttgtgtgtttttttcaattattattattagATTCTGTATTCAATTCAGCAAAGCCAAGTAGCCAGGCACCAAGTACCGACCTCCAATTTGGCGCTCTAAATAAG
tttgtgtgtttttttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtcttttgtagaagggggaggtcatgatctaaggcactaatgatatctcacattttcttgtctgatcctttgtgtgtttttttcaattattattattagATTCTGTATTCAATTCAGCAAAGCCAAGTAGCCAGGCACCAAGTACCGACCTCCAATTTGGCGCTCTAAATAAG
- - - - - - - -ggggagg
- - - - - - - - - - - -catgatc
- - - - - - - - - - - - - - - - - gcactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgtgt