1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...agaatcttttcttgccctctgttatcgaatttttcaattttttttatatttgaaaaagggtcttgctcttgagaataatgtcgatgatattactatgcagCTGAGATAGCTTGGCATCAAAGAAGAAAAGAGTGGGTTGGTGATGAATCCCAGAAGCCAAAGAGAGTGCATAAAGAACCAGTTATGAG
species | Vitis vinifera |
transcript | Vv08s0007g04960.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAGAAATTCCATCGAGAAAGAAGTTTGTGATTCTGTCTTTATCAACCATG CTGAGATAGCTTGGCATCAAAGAAGAAAAGAGTGGGTCGGTGATGAATCCCEST: gi|110691149|gb|EE068923.1|EE068923
genomic: AAGAAATTCCATCGAGAAAGAAGTTTGTGATTCTGTCTTTATCAACCATGgtatgtcctt ... tactatgcagCTGAGATAGCTTGGCATCAAAGAAGAAAAGAGTGGGTTGGTGATGAATCCC
EST: AAGAAATTCCATCGAGAAAGAAGTTTGTGATTCTGTCTTTATCAACCATG CTGAGATAGCTTGGCATCAAAGAAGAAAAGAGTGGGTCGGTGATGAATCCCEST: gi|18459041|gb|BM437319.1|BM437319
genomic: AAGAAATTCCATCGAGAAAGAAGTTTGTGATTCTGTCTTTATCAACCATGgtatgtcctt ... tactatgcagCTGAGATAGCTTGGCATCAAAGAAGAAAAGAGTGGGTTGGTGATGAATCCC
EST: GAGAAATTCCATCGAGAAAGAAGTTTGTGATTCTGTCTTTATCAACCATG CTGAGATAGCTTGGCATCAAAGAAGAAAAGAGTGGGTCGGTGATGAATCCC
genomic: AAGAAATTCCATCGAGAAAGAAGTTTGTGATTCTGTCTTTATCAACCATGgtatgtcctt ... tactatgcagCTGAGATAGCTTGGCATCAAAGAAGAAAAGAGTGGGTTGGTGATGAATCCC
atatttgaaaaagggtcttgctcttgagaataatgtcgatgatattactatgcagCTGAGATAGCTTGGCATCAAAGAAGAAAAGAGTGGGTTGGTGATGAATCCCAGAAGCCAAAGAGAGTGCATAAAGAACCAGTTATGAG
atattactat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaatcttttcttgccctctgttatcgaatttttcaattttttttatatttgaaaaagggtcttgctcttgagaataatgtcgatgatattactatgcagCTGAGATAGCTTGGCATCAAAGAAGAAAAGAGTGGGTTGGTGATGAATCCCAGAAGCCAAAGAGAGTGCATAAAGAACCAGTTATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - cttgccc
- - - - - - - - - - - - - - - - - - - - - - - - - tgaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaataa