Sequence
atgc intronic sequence ATGC exonic sequence...tgccagaaacttattattgtcacctaccagaagagagttatatgaaagtcatttatataatgtcgcaaaaccaataatcttacagtggatgcttttgtagGTTCGTGGTCCAACTTGTGCACGAAGGCTTGCAACCTATCTCACAGGGGTGGAGAATGAGGAAATAAAGAACATTCTTGTCTTGGAACGTGGCTTCAATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g04910.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA19G36900.1 (Glycine max), 3'ss of exon 1
tgccagaaacttattattgt----cacctaccagaagaga-gttatatgaaagtcatttatataatgtcgcaaaaccaataatcttacagtggatgcttttgtagGTTCGTGGTCCAACTTGTGCACGAAGGCTTGCAACCTATCTCACAGGGGT---GGAGAATGAGGAAATAAAGAACATTCTTGTCTTGGAACGTGGCTTCAATG
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-ttgataaactttttgtaatgggacatgtatcttcctatatgctttttgtatgataccagaatg-tctctctaaactgaaagtagcataa---actattttgtagGTTCGTGGCCCAACTTGTGCTAGGAGGCTTGTCAATTATCTTGAGGAGAACAAGGAAGATACTGGGATAAAGAACATTATGGTCTTGGAACGTGGCTTCA---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32271536|gb|CD720695.1|CD720695EST: AAGAGGTCAAAGGGAAGGACACCCTGGTCTTCCATTGCGCCTTAAGTCAG GTTCGTGGTCCAACTTGTGCACGAAGGCTTGCAACCTATCTCACAGGGGTG
genomic: AAGAGGTCAAAGGGAAGGACACCCTGGTCTTCCATTGCGCCTTAAGTCAGgtgggtggat ... gcttttgtagGTTCGTGGTCCAACTTGTGCACGAAGGCTTGCAACCTATCTCACAGGGGTG
EST:
gi|71878665|gb|DT027720.1|DT027720EST: AAGAGGTCAAAGGGAAGGACACCCTGGTCTTCCATTGCGCCTTAAGTCAG GTTCGTGGTCCAACTTGTGCACGAAGGCTTGCAACCTATCTCACAGGGGTG
genomic: AAGAGGTCAAAGGGAAGGACACCCTGGTCTTCCATTGCGCCTTAAGTCAGgtgggtggat ... gcttttgtagGTTCGTGGTCCAACTTGTGCACGAAGGCTTGCAACCTATCTCACAGGGGTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aagtcatttatataatgtcgcaaaaccaataatcttacagtggatgcttttgtagGTTCGTGGTCCAACTTGTGCACGAAGGCTTGCAACCTATCTCACAGGGGTGGAGAATGAGGAAATAAAGAACATTCTTGTCTTGGAACGTGGCTTCAATG
atcttac putative branch site (score: 3)
tgctttt putative PPT
atttatataatgt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgccagaaacttattattgtcacctaccagaagagagttatatgaaagtcatttatataatgtcgcaaaaccaataatcttacagtggatgcttttgtagGTTCGTGGTCCAACTTGTGCACGAAGGCTTGCAACCTATCTCACAGGGGTGGAGAATGAGGAAATAAAGAACATTCTTGTCTTGGAACGTGGCTTCAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- -cagaaac
- - - - - - - - - - - cctacca
- - - - - - - - - - - - - - -gaagaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaacc