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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttttatttgagatttcccaatcaagatcttaaattttgatatatatatattgagcttgctgcttcttgttttgtttataatatctaaatgtggtgagttcctattgtttgttttacatgttgtagGTCACCGACCTTGTTTTCTTGGATTCTGGTAAAAAACTTGTTAGTTCATCCAAAGACAAATTTTTGAGAGTTTGGGATCTTGAAACCCAACACTGTATGC

Basic information

species Vitis vinifera
transcript Vv08s0007g04690.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g04690.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA03G34360.1 (Glycine max), 3'ss of exon 2
gtttttatttgagatttcccaatcaagatcttaaattttgatatatatatattgagcttgctgcttcttgttttg-tttataatatctaaatgtggtgagttcctattgtttgttttacatgttgtagGTCACCGACCTTGTTTTCTTGGATTCTGGTAAAAAACTTGTTAGTTCATCCAAAGACAAATTTTTGAGAGTTTGGGATCTTGAAACCCAACACTGTATGC
              |  |  ||   |||  |  | |||| || |   |  |   | |   |||  ||     | | || | | | | | ||| ||         ||||  |  ||  |  ||| | |||| || ||| |||||||| ||  |||||| ||||| ||||||||||| ||||||||||| || |||||||| |||||| |||| ||||| || |||||||
--------------tacctgaaatgagagtt--acttttcatttccctcca--aaaccctctgtctcaaacataggttgagagttttttaatatg---------tatttctcattc-atttgtggcagGTAACTGACGTTGTTTTCCTGAGTTCTGGGAAAAAGCTTGTTAGTTCCTCCAAAGACAAGTTCTTGAGAGTGTGGGATATTGATACCCAGCATTGTATGC

upper sequence: Vv08s0007g04690.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT3G21540.1 (Arabidopsis thaliana), 3'ss of exon 2
gtttttatttgagatttcccaatcaagatcttaaattttgatatatatatattgagcttgctgcttcttgttttgtttataatatctaaatgtggtgagttcctattgtttgttttacatgttgtagGTCACCGACCTTGTTTTCTTGGATTCTGGTAAAAAACTTGTTAGTTCATCCAAAGACAAATTTTTGAGAGTTTGGGATCTTGAAACCCAACACTGTATGC
    |||||| |  | |  |  |  | || |  | | || |    | | |  |||   ||||   |  ||| | | || | |||      | ||   ||  |  | ||||  | |  | |  |||||||||| || ||||| |||||||||  |||||| |||||||| |||||||| || ||||| || |||||||| ||||||||||| ||||||||||||||||
---gttatttaatgtctagc--ttgatatttctagtattta---gtgtttgatgattctgcta--tggtgtgtgggtttttatagtggtttttgacaagagc--aatgttcatgtgtc-taatgtagGTCACAGATCTTGTATTCTTGGATGGTGGTAAGAAACTTGTAAGTTCATCTAAGGACAAGTTCTTGAGAGTCTGGGATCTTGAGACCCAACACTGTATGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtttataatatctaaatgtggtgagttcctattgtttgttttacatgttgtagGTCACCGACCTTGTTTTCTTGGATTCTGGTAAAAAACTTGTTAGTTCATCCAAAGACAAATTTTTGAGAGTTTGGGATCTTGAAACCCAACACTGTATGC
           atctaaa  putative branch site (score: 3)
     tataatatctaaatgt  TA-rich tract