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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttctctaaaatctttgtcataaaatccttgaaggaatcatgattttgtaatcatgtttttattgccatcacaagGGGTGCAGCTTCCACTGGAGAAGATGACTTTGTTTCCATCTGGCGGGAGTGCAGTGATGATCAAAAGGATTGTTTAGGATCTATTGTGGTTCCGATTGGT

Basic information

species Vitis vinifera
transcript Vv08s0007g03910.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g03910.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA13G21480.1 (Glycine max), 3'ss of exon 2
gtgagt-tctctaaaatctttgtcataa-------aatccttgaaggaatcatgattttgtaatcatgtttttattgccatcacaagGGGTGCAGCTTCCACTGGAGAAGATGACTTTGTTTCCATCTGGCGGGAGTGCAGTGATGATCAAAAGGATTGTTTAGGATCTATTGTGGTTCCGATTGGT
|||||  ||  | | ||   || | | |       ||   ||       ||||   | | |||   |||||| |||||||| ||||| ||| |||||||   ||| |||||| ||||| ||||||||||| |||| |||||| ||||||  || ||||| ||||||||| ||||  |||| || |||
gtgagcctccttgacattcatggcttgacctatttaactttttgtctggtcatatctgtctaactgtgtttt-attgccataacaagTGGTTCAGCTTCTGTTGGGGAAGATCACTTTTTTTCCATCTGGAGGGATTGCAGTAATGATCTGAAAGATTGCTTAGGATCTGTTGTTATTCCCATAGGT

upper sequence: Vv08s0007g03910.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA10G07610.1 (Glycine max), 3'ss of exon 3
gtgagt-tctctaaaatctttgtcataa-------aatccttgaaggaatcatgatt-ttgtaatcatgtttttattgccat-cacaagGGGTGCAGCTTCCACTGGAGAAGATGACTTTGTTTCCATCTGGCGGGAGTGCAGTGATGATCAAAAGGATTGTTTAGGATCTATTGTGGTTCCGATTGGT
|||||  ||  |   ||   || | | |       ||   ||       ||||     |  |||   |||||| ||||| || |||||||||| |||||||   ||| |||||| ||||| ||||||||||| || | |||||| ||||||  || ||||| ||||||||| ||||  |||| || |||
gtgagcctccttggcattcatggcctgacctatttaactttttgtctggtcatatcagtcttaactgtgtttt-attgctatacacaagGGGTTCAGCTTCTGTTGGGGAAGATCACTTTTTTTCCATCTGGAGGAATTGCAGTAATGATCTGAAAGATTGCTTAGGATCTGTTGTTATTCCCATAGGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaaatccttgaaggaatcatgattttgtaatcatgtttttattgccatcacaagGGGTGCAGCTTCCACTGGAGAAGATGACTTTGTTTCCATCTGGCGGGAGTGCAGTGATGATCAAAAGGATTGTTTAGGATCTATTGTGGTTCCGATTGGT
                      attttgtaatcatgtt  TA-rich tract