1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ctgggactattttttttttctcttaactgaaaaagcgtacactccttttggatatttttttggttgctttttaagcttgcctttttgtttttgattgcagGCTTGTGCACTATACAACAACTGGTGGCCAATGTTATCAG
species | Vitis vinifera |
transcript | Vv08s0007g02930.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTTCATCCAGTATCCTGCTGCAGATCCTG GCTTGTGCACTATACAACAACTGGTGGCCAATGTTATCAGEST: gi|110380564|gb|EC945837.1|EC945837
genomic: TTTCATCCAGTATCCTGCTGCAGATCCTGgtaaattttc ... ttgattgcagGCTTGTGCACTATACAACAACTGGTGGCCAATGTTATCAG
EST: TTGCTGGTCTTGCTTTTATGTTTTCATCCAGTATCCTGCTGCAGATCCTG GCTTGTGCACTATACAACAACTGGTGGCCAATGTTATCAG
genomic: TTGCTGGTCTTGCTTTTATGTTTTCATCCAGTATCCTGCTGCAGATCCTGgtaaattttc ... ttgattgcagGCTTGTGCACTATACAACAACTGGTGGCCAATGTTATCAG
ttttggatatttttttggttgctttttaagcttgcctttttgtttttgattgcagGCTTGTGCACTATACAACAACTGGTGGCCAATGTTATCAG
ttttgat putative branch site (score: 4)
cttgcctttttgtttt CT-rich tract
tttttgtttttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgggactattttttttttctcttaactgaaaaagcgtacactccttttggatatttttttggttgctttttaagcttgcctttttgtttttgattgcagGCTTGTGCACTATACAACAACTGGTGGCCAATGTTATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - -tgaaaaa
- - - - - - - - - - - - - - - - - - - -cactcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggttgc