1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...aaggacaaaaatgctttgtgtctgtcagtgacaataacattgtctacttgtgtggatcaccttgaaccttttctcactgaattttttacttggtgatcagGGCTAGTCGGAAAGGTGGACTTCACTGTTAGGCACCTCTCTTCATCCACGACTTCCTTTCCAACGTCATGGGAATTGTCCAGTAGCCAACAATGTATTGG
species | Vitis vinifera |
transcript | Vv08s0007g02270.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGTCATCACTACAGCCATCGTCTGTGCTCTTGTGCTTGGCATTCTATATG GGCTAGTCGGAAAGGTGGACTTCACTGTTAGGCACCTCTCTTCATCCACGAEST: gi|110730406|gb|EE107450.1|EE107450
genomic: GGTCATCACTACAGCCATCGTCTGTGCTCTTGTGCTTGGCATTCTATATGgttagttgtt ... tggtgatcagGGCTAGTCGGAAAGGTGGACTTCACTGTTAGGCACCTCTCTTCATCCACGA
EST: GGTCATCACTACAGCCATCGTCTGTGCTCTTGTGCTTGGCATTCTATATG GGCTAGTCGGAAAGGTGGACTTCACTGTTAGGCACCTCTCTTCATCCACGAEST: gi|161716762|gb|FC065585.1|FC065585
genomic: GGTCATCACTACAGCCATCGTCTGTGCTCTTGTGCTTGGCATTCTATATGgttagttgtt ... tggtgatcagGGCTAGTCGGAAAGGTGGACTTCACTGTTAGGCACCTCTCTTCATCCACGA
EST: GGTCATCACTACAGCCATCGTCTGTGCTCTTGTGCTTGGCATTCTATATG GGCTAGTCGGAAAGGTGGACTTCACTGTTAGGCACCTCTCTTCATCCACGAEST: gi|110372187|gb|EC936337.1|EC936337
genomic: GGTCATCACTACAGCCATCGTCTGTGCTCTTGTGCTTGGCATTCTATATGgttagttgtt ... tggtgatcagGGCTAGTCGGAAAGGTGGACTTCACTGTTAGGCACCTCTCTTCATCCACGA
EST: GGTCATCACTACAGCCATCGTCTGTGCTCTTGTGCTTGGCATTCTATATG GGCTAGTCGGAAAGGTGGACTTCACTGTTAGGCACCTCTCTTCATCCACGAEST: gi|110708808|gb|EE086769.1|EE086769
genomic: GGTCATCACTACAGCCATCGTCTGTGCTCTTGTGCTTGGCATTCTATATGgttagttgtt ... tggtgatcagGGCTAGTCGGAAAGGTGGACTTCACTGTTAGGCACCTCTCTTCATCCACGA
EST: GGTCATCACTACAGCCATCGTCTGTGCTCTTGTGCTTGGCATTCTATATG GGCTAGTCGGAAAGGTGGACTTCACTGTTAGGCACCTCTCTTCATCCACGA
genomic: GGTCATCACTACAGCCATCGTCTGTGCTCTTGTGCTTGGCATTCTATATGgttagttgtt ... tggtgatcagGGCTAGTCGGAAAGGTGGACTTCACTGTTAGGCACCTCTCTTCATCCACGA
acttgtgtggatcaccttgaaccttttctcactgaattttttacttggtgatcagGGCTAGTCGGAAAGGTGGACTTCACTGTTAGGCACCTCTCTTCATCCACGACTTCCTTTCCAACGTCATGGGAATTGTCCAGTAGCCAACAATGTATTGG
ttctcac putative branch site (score: 2)
ttttttactt putative PPT
tgaattttttactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaggacaaaaatgctttgtgtctgtcagtgacaataacattgtctacttgtgtggatcaccttgaaccttttctcactgaattttttacttggtgatcagGGCTAGTCGGAAAGGTGGACTTCACTGTTAGGCACCTCTCTTCATCCACGACTTCCTTTCCAACGTCATGGGAATTGTCCAGTAGCCAACAATGTATTGG
- - acaaaaa
- - - - - -tgctttg
- - - - - - - - - tgtctgt
- - - - - - - - - - - - - - - -caataac
- - - - - - - - - - - - - - - - - - - - - - - - tgtgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -caccttg