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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgtatgtctgtttcccatcatcatccccagtccacaccatacaggtcatgttgtttgccagtgggttgttcttgaccagctttcttctggttggatttttgggtggacatggtactgatgttgtgcaaatattctaaaatacagGATGCTGCTGTGCAGCCATCTTTGGTGATAGTCTATTTTGGTGGTAACGACTCGATGCACCCTCACCCATCTGGTCTAGGCCCCCATGTACCACTTCCTG

Basic information

species Vitis vinifera
transcript Vv08s0007g02260.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110373489|gb|EC937731.1|EC937731
EST:     GGTGGAACTCAAGGCGTGCTCTCCAAGTTCTGGACCAAGTGTTTCCAAAG                         GATGCTGCTGTGCAGCCATCTTTGGTGATAGTCTATTTTGGTGGTAACGAC
genomic: GGTGGAACTCAAGGCGTGCTCTCCAAGTTCTGGACCAAGTGTTTCCAAAGgtattgtatg ... taaaatacagGATGCTGCTGTGCAGCCATCTTTGGTGATAGTCTATTTTGGTGGTAACGAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttggatttttgggtggacatggtactgatgttgtgcaaatattctaaaatacagGATGCTGCTGTGCAGCCATCTTTGGTGATAGTCTATTTTGGTGGTAACGACTCGATGCACCCTCACCCATCTGGTCTAGGCCCCCATGTACCACTTCCTG
                                          ttctaaa  putative branch site (score: 2)
                                     aaatattctaaaatac  TA-rich tract