1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaaagccagacactgggaaaaagagagatggtgcttcttcttttttccgttggaatttcaagcacaagaaaataacattttttggttatgctgatcgcagGTGGCACAAGTTCTGTTGACACTGCCCTACTCCTTCTCTCAGCTGGGCATGCTATCAGGGATCATATTCCAGATATTCTATGGCCTCGTGGGAAGCTGGA
species | Vitis vinifera |
transcript | Vv08s0007g02030.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGCACGGTGGCTCCGCTTGGGATGCCTGGTTCAGTTGCGCCTCGAATCAA GTGGCACAAGTTCTGTTGACACTGCCCTACTCCTTCTCTCAGCTGGGCATGEST: gi|161710741|gb|FC059078.1|FC059078
genomic: GGCACGGTGGCTCCGCTTGGGATGCCTGGTTCAGTTGCGCCTCGAATCAAgtaaagccag ... ctgatcgcagGTGGCACAAGTTCTGTTGACACTGCCCTACTCCTTCTCTCAGCTGGGCATG
EST: GGCACGGTGGCTCCGCTTGGGATGCCTGGTTCAGTTGCGCCTCGAATCAA GTGGCACAAGTTCTGTTGACACTGCCCTACTCCTTCTCTCAGCTGGGCATGEST: gi|110685103|gb|EE063138.1|EE063138
genomic: GGCACGGTGGCTCCGCTTGGGATGCCTGGTTCAGTTGCGCCTCGAATCAAgtaaagccag ... ctgatcgcagGTGGCACAAGTTCTGTTGACACTGCCCTACTCCTTCTCTCAGCTGGGCATG
EST: GGCACGGTGGCTCCGCTTGGGATGCCTGGTTCAGTTGCGCCTCGAATCAA GTGGCACAAGTTCTGTTGACACTGCCCTACTCCTTCTCTCAGCTGGGCATG
genomic: GGCACGGTGGCTCCGCTTGGGATGCCTGGTTCAGTTGCGCCTCGAATCAAgtaaagccag ... ctgatcgcagGTGGCACAAGTTCTGTTGACACTGCCCTACTCCTTCTCTCAGCTGGGCATG
tccgttggaatttcaagcacaagaaaataacattttttggttatgctgatcgcagGTGGCACAAGTTCTGTTGACACTGCCCTACTCCTTCTCTCAGCTGGGCATGCTATCAGGGATCATATTCCAGATATTCTATGGCCTCGTGGGAAGCTGGA
aaaataacattttttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagccagacactgggaaaaagagagatggtgcttcttcttttttccgttggaatttcaagcacaagaaaataacattttttggttatgctgatcgcagGTGGCACAAGTTCTGTTGACACTGCCCTACTCCTTCTCTCAGCTGGGCATGCTATCAGGGATCATATTCCAGATATTCTATGGCCTCGTGGGAAGCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA