Sequence
atgc intronic sequence ATGC exonic sequencegtaagtcctttcttttttgtgggagtctaaaatgataaatcaattgataatgcataattgtggcgttcggagttcctaacataaaatttttcttctttacagGTACAAAGAATGGCAAACGAAACTGGTCTTGACTTCAGTGATCAGATTATCTCATTGGAGAATAAGTATCAACAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g01750.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA18G42300.1 (Glycine max), 3'ss of exon 1
-----------------gtaagtcctttcttt-tttgtgggagtctaaa-atgataaatcaattgataatgcataattgtggcgttcggagttc-----ctaacataa--aatttttcttcttt---acagGTACAAAGAATGGCAAACGAAACTGGTCTTGACTTCAGTGATCAGATTATCTCATTGGAGAATAAGTATCAACAG
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gtaacttctaacttaatctgtgtgctttgtttgcttgagcgagaatgaatatgttgtatt--ttcctgattcgtggaggttgtgcttattgctaatgagctaacataagtggtatttatggttggaaacagGTACAAAAGATGGCGAACGAAACTGGACTGGACTTCAGTGATCAGATTCTCTCATTGGAGACCAAGTACCAGCAG
upper sequence: Vv08s0007g01750.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA18G42310.2 (Glycine max), 3'ss of exon 1
-----------------gtaagtcctttcttt-tttgtgggagtctaaa-atgataaatcaattgataatgcataattgtggcgttcggagttc-----ctaacataa--aatttttcttcttt---acagGTACAAAGAATGGCAAACGAAACTGGTCTTGACTTCAGTGATCAGATTATCTCATTGGAGAATAAGTATCAACAG
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gtaacttctaacttaatctgtgtgctttgtttgctcgagcgagaatgaatatgttgtatttgcc--tgattcgtggaggttgtgcttattgctaatgggctaacataagtggtatttatggttggaaacagGTACAGAAGATGGCGAACGAAACTGGACTGGACTTCAGTGATCAGATTCTCTCATTGGAGAACAAGTACCAGCAG
upper sequence: Vv08s0007g01750.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA18G42280.1 (Glycine max), 3'ss of exon 1
--------------------------------gtaagtcctttcttt-tttgtgggagtctaaa-atgataaatcaattgataatgcataattgtggcgttcggagttc-----ctaacataa--aatttttcttcttt---acagGTACAAAGAATGGCAAACGAAACTGGTCTTGACTTCAGTGATCAGATTATCTCATTGGAGAATAAGTATCAACAG
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gtaacttctaacttaatctgtgtgttgtgttgctgtgtgctttgtttgcttgagcgagaatgaatatgttgtatttgcc--tgattcgtggaggttgtgcttattgctaataagctaacataagtggtatttatgattggaaacagGTACAGAAGATGGCGAACGAAACTGGACTGGACTTCAGTGATCAGATTCTCTCATTGGAGACCAAGTACCACCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122689389|gb|EC938332.1|EC938332EST: CTTTGGATTTTGAGAAACCCCTCCTGGATCTACAGAAGAAGATTGTAGAT GTACAAAGAATGGCAAACGAAACTGGTCTTGACTTCAGTGATCAGATTATC
genomic: CTTTGGATTTTGAGAAACCCCTCCTGGATCTACAGAAGAAGATTGTAGATgtaagtcctt ... ttctttacagGTACAAAGAATGGCAAACGAAACTGGTCTTGACTTCAGTGATCAGATTATC
EST:
gi|161715758|gb|FC066162.1|FC066162EST: CTTTGGATTTTGAGAAACCCCTCCTGGATCTACAGAAGAAGATTGTAGAT GTACAAAGAATGGCAAACGAAACTGGTCTTGACTTCAGTGATCAGATTATC
genomic: CTTTGGATTTTGAGAAACCCCTCCTGGATCTACAGAAGAAGATTGTAGATgtaagtcctt ... ttctttacagGTACAAAGAATGGCAAACGAAACTGGTCTTGACTTCAGTGATCAGATTATC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taatgcataattgtggcgttcggagttcctaacataaaatttttcttctttacagGTACAAAGAATGGCAAACGAAACTGGTCTTGACTTCAGTGATCAGATTATCTCATTGGAGAATAAGTATCAACAG
tcctaac putative branch site (score: 1)
tttttcttctttac putative PPT
taacataaaatttttc TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtcctttcttttttgtgggagtctaaaatgataaatcaattgataatgcataattgtggcgttcggagttcctaacataaaatttttcttctttacagGTACAAAGAATGGCAAACGAAACTGGTCTTGACTTCAGTGATCAGATTATCTCATTGGAGAATAAGTATCAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA